PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400025710
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 180aa    MW: 19866.1 Da    PI: 6.718
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400025710genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.51.4e-12549855
                   AP2  8 wdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          +++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  PGSC0003DMP400025710  5 RHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 49
                          7899*******988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103216.45157IPR001471AP2/ERF domain
PfamPF008475.1E-7549IPR001471AP2/ERF domain
SMARTSM003804.0E-24563IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-15558IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.7E-16557IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006396Biological ProcessRNA processing
GO:0090502Biological ProcessRNA phosphodiester bond hydrolysis, endonucleolytic
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004525Molecular Functionribonuclease III activity
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MNFCRHHQQG RWQARIGRVA GNKDLYLGTF ATEEEAAEAY DIAAIKFRGL NAVTNFEMNR  60
YDVEAIMKSS LPIGGAAKRL KISLESEQKQ SLNDTYQQTL HNSVNNSSSN NSINFGAISP  120
VSAIPCGLPF DANQPYYHHS FFPHLQYSSN DGGASDHTSG TMPLLPAPAE IFIWPHQSY*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400025710
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755170.0HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006360401.21e-129PREDICTED: AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU23e-47AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLM1B5Z21e-132M1B5Z2_SOLTU; Uncharacterized protein
STRINGSolyc05g051380.2.11e-122(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.14e-47AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  3. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  4. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]