PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400025710 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 180aa MW: 19866.1 Da PI: 6.718 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 39.5 | 1.4e-12 | 5 | 49 | 8 | 55 |
AP2 8 wdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++++grW A+I + +k +lg+f t+eeAa+a++ a+ k++g PGSC0003DMP400025710 5 RHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 49 7899*******988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 16.45 | 1 | 57 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.1E-7 | 5 | 49 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.0E-24 | 5 | 63 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-15 | 5 | 58 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 6.7E-16 | 5 | 57 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006396 | Biological Process | RNA processing | ||||
GO:0090502 | Biological Process | RNA phosphodiester bond hydrolysis, endonucleolytic | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0004525 | Molecular Function | ribonuclease III activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MNFCRHHQQG RWQARIGRVA GNKDLYLGTF ATEEEAAEAY DIAAIKFRGL NAVTNFEMNR 60 YDVEAIMKSS LPIGGAAKRL KISLESEQKQ SLNDTYQQTL HNSVNNSSSN NSINFGAISP 120 VSAIPCGLPF DANQPYYHHS FFPHLQYSSN DGGASDHTSG TMPLLPAPAE IFIWPHQSY* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400025710 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975517 | 0.0 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006360401.2 | 1e-129 | PREDICTED: AP2-like ethylene-responsive transcription factor AIL6 | ||||
Swissprot | Q52QU2 | 3e-47 | AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6 | ||||
TrEMBL | M1B5Z2 | 1e-132 | M1B5Z2_SOLTU; Uncharacterized protein | ||||
STRING | Solyc05g051380.2.1 | 1e-122 | (Solanum lycopersicum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10510.1 | 4e-47 | AINTEGUMENTA-like 6 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400025710 |
Publications ? help Back to Top | |||
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