PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400025709
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family AP2
Protein Properties Length: 523aa    MW: 57762.2 Da    PI: 6.9255
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400025709genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP224.85.4e-08133164337
                   AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfg 37 
                           y+GV++++++grW A+I  +     +k  +lg+fg
  PGSC0003DMP400025709 133 YRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFG 164
                           9***************988532...5********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510329.9281196IPR001471AP2/ERF domain
SMARTSM003803.0E-456102IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-75996IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-76196IPR001471AP2/ERF domain
CDDcd000181.35E-20131209No hitNo description
SuperFamilySSF541711.11E-10131210IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.1E-4132164IPR001471AP2/ERF domain
PROSITE profilePS5103214.921132209IPR001471AP2/ERF domain
SMARTSM003802.4E-21132215IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-6184209IPR001471AP2/ERF domain
SMARTSM005356.6E-22288435IPR000999Ribonuclease III domain
CDDcd005931.02E-29312433IPR000999Ribonuclease III domain
Gene3DG3DSA:1.10.1520.102.0E-25312434IPR000999Ribonuclease III domain
PfamPF006362.2E-17312412IPR000999Ribonuclease III domain
SuperFamilySSF690658.37E-24312432IPR000999Ribonuclease III domain
PROSITE profilePS5014224.177312413IPR000999Ribonuclease III domain
SuperFamilySSF547683.47E-9395499No hitNo description
Gene3DG3DSA:3.30.160.209.8E-5438498IPR014720Double-stranded RNA-binding domain
CDDcd000485.95E-7438498No hitNo description
PfamPF000359.6E-6439498IPR014720Double-stranded RNA-binding domain
SMARTSM003580.0092439500IPR014720Double-stranded RNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006396Biological ProcessRNA processing
GO:0090502Biological ProcessRNA phosphodiester bond hydrolysis, endonucleolytic
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004525Molecular Functionribonuclease III activity
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MAVGGFQTLP TNSGSEVDDS QVMGSEFATE SSNELGYPPI ITLGVNNNTN SEKAIVTAVN  60
SGSLYLGGYD KEDKAARSYD LAALKYWGTS ATTNFLASDY TKEIEEMKHM TKQEFIASLR  120
RKSSGFSRGA SMYRGVTRHH QQGRWQARIG RVAGNKDLYL GTFGASTPFA PLVTRTRNLR  180
VGTTEEEAAE AYDIAAIKFR GLNAVTNFEM NRYDVEAIMK SSLPIGGAAK RLKISLESEQ  240
KQSLNDTYQQ TLHNSVNNSS SNNSINFGAI SPVSAIPCGL PFDANQPYYH HSFFPHLQYS  300
SNDGGASDHT SGDSILNMLI TLKLFFDYPD LSSGMLTKLR AANVDTEKLA RVAIKYNLHN  360
YLRHKRPLLK GQVEEFKEAI LEYPLHSLGL IDPPKVLADL VESLIGAIHS DSNCLDTTWQ  420
VVKNLLQPLI TPEKLEVNPV TKLYELCQKK GLKIKFVDHW EKTGEVEVFV DGKFVGKGKL  480
CGKKITAKNR AAHNAYEQVV QNLSVEVIIN DDHDQLCDET QS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3c4b_A7e-1731250257264Endoribonuclease Dicer
3c4t_A7e-1731250257264Endoribonuclease Dicer
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400025709
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
GenBankHG9755170.0HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006360401.20.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ6J9N84e-83AIL7_ARATH; AP2-like ethylene-responsive transcription factor AIL7
TrEMBLM1B5Z10.0M1B5Z1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000378350.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25802449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.12e-83AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]