PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400025669
Common NameLOC102580039
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 791aa    MW: 90328.2 Da    PI: 6.7654
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400025669genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH120.00038136184432
                           HHHHHHHHHHHHHHHHHHHHHCTSCC.C..................... CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPk.as...................k 32 
                           + n+ E+r+R ++ + f   r+ lP+ ++                   +
  PGSC0003DMP400025669 136 KTNILEQRYRINVGELFGHVRKKLPWaDPkvvkevvdlklykllgertA 184
                           45************************55455555555555555555552 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045581.2E-558164IPR007639Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain, N-terminal
PfamPF045574.3E-14167259IPR007638Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain 2
CDDcd008072.73E-138266576No hitNo description
SuperFamilySSF523746.48E-87266578No hitNo description
PfamPF007492.1E-120266571IPR020058Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain
Gene3DG3DSA:3.40.50.6201.3E-38266335IPR014729Rossmann-like alpha/beta/alpha sandwich fold
TIGRFAMsTIGR004401.9E-188267787IPR004514Glutamine-tRNA synthetase
PRINTSPR009874.6E-7270282IPR000924Glutamyl/glutaminyl-tRNA synthetase
PROSITE patternPS001780273284IPR001412Aminoacyl-tRNA synthetase, class I, conserved site
PRINTSPR009874.6E-7299312IPR000924Glutamyl/glutaminyl-tRNA synthetase
Gene3DG3DSA:3.90.800.101.2E-43339443No hitNo description
PRINTSPR009874.6E-7444454IPR000924Glutamyl/glutaminyl-tRNA synthetase
Gene3DG3DSA:3.40.50.6201.3E-38446495IPR014729Rossmann-like alpha/beta/alpha sandwich fold
Gene3DG3DSA:1.10.1160.103.9E-31496573IPR020061Glutamyl/glutaminyl-tRNA synthetase, class Ib, alpha-bundle domain
PfamPF039508.8E-41574765IPR020059Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain
SuperFamilySSF507153.19E-55574784IPR011035Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain
Gene3DG3DSA:2.40.240.105.6E-30582692IPR020056Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain
Gene3DG3DSA:2.40.240.101.5E-27693783IPR020056Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006425Biological Processglutaminyl-tRNA aminoacylation
GO:0048481Biological Processplant ovule development
GO:0005737Cellular Componentcytoplasm
GO:0004819Molecular Functionglutamine-tRNA ligase activity
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 791 aa     Download sequence    Send to blast
MVKEDSNVLD LFLKIGLDEK TAKNTLANNK VTTNLTAVIH EAAVIDGCDR AVGNLLYTVA  60
TKFPANALNH RPTLLQYIVS TKIKTPAQLE AAFAFLASTA SENLKAHDFE EACGVGVEVS  120
KEDIERAVSE VFEEKKTNIL EQRYRINVGE LFGHVRKKLP WADPKVVKEV VDLKLYKLLG  180
ERTAADNEKP VKKKKEKPAK TEDKAKVEET SAPKQSEEEL NPYLIFPTPE ENYKVHTEIY  240
FSDRPVLRAC NSKELLEKHL KVTGGKVLTR FPPEPNGFLH IGHAKAMFVD FGLAKERGGG  300
CYLRFDDTNP EAEKKEYIDH IKEIVGWMGW EPFKITYTSD YFQDLYELAV ELIRRGHAYV  360
DHQTPDEVKE YREKKMNSPW RDRPIEESLR LFDEMKKGMI DEGKATLRMK QDMQNDNFNM  420
YDLIAYRIKF TPHPHAGDKW CIYPSYDYAH CIVDSLENIT HSLCTLEFET RRASYYWLLD  480
ALGLYQPFVW EYSRLNVSNT VMSKRKLNRL VTENWVDGWD DPRLMTLAGL RRRGVTSTAI  540
NAFVRGIGIT RSDSSMIQLS RLEYHIREEL NKTAARTLVV LNPLKVVITN IEAGLVMDLD  600
AKKWPEAPAD DASSFYKVPF SRVVYIERTD FRLKDSKDYY GLAPGKSVLL RYAYPIKCTD  660
VILADDKETV LEIRAEYDPS KTIKPKGVLH WVAEPSPGVD PLKVEVRLFD RLFCSENPAE  720
LDDWLGDLSP ESKVVIQNAY AVPSVSKATL GDKFQFERLG YFAVDKDSTS EKLVFNRTVT  780
LRDNYAKGGK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ye9_A0.097878775Glutamine--tRNA ligase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400025669
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006344143.10.0PREDICTED: glutamine--tRNA ligase
SwissprotP527800.0SYQ_LUPLU; Glutamine--tRNA ligase
TrEMBLM1B5V80.0M1B5V8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000377680.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA69741213
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]