PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400025668
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 725aa    MW: 82258 Da    PI: 6.7631
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400025668genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.20.00034136184432
                           HHHHHHHHHHHHHHHHHHHHHCTSCC.C..................... CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPk.as...................k 32 
                           + n+ E+r+R ++ + f   r+ lP+ ++                   +
  PGSC0003DMP400025668 136 KTNILEQRYRINVGELFGHVRKKLPWaDPkvvkevvdlklykllgertA 184
                           45************************55455555555555555555552 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045581.1E-558164IPR007639Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain, N-terminal
PfamPF045573.8E-14167259IPR007638Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain 2
Gene3DG3DSA:3.40.50.6208.0E-39266335IPR014729Rossmann-like alpha/beta/alpha sandwich fold
CDDcd008072.88E-149266510No hitNo description
SuperFamilySSF523747.32E-66266512No hitNo description
PfamPF007492.6E-41266363IPR020058Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain
PROSITE patternPS001780273284IPR001412Aminoacyl-tRNA synthetase, class I, conserved site
Gene3DG3DSA:3.90.800.106.2E-6339363No hitNo description
PfamPF007493.9E-48364505IPR020058Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain
Gene3DG3DSA:3.40.50.6208.0E-39380429IPR014729Rossmann-like alpha/beta/alpha sandwich fold
Gene3DG3DSA:1.10.1160.103.5E-31430507IPR020061Glutamyl/glutaminyl-tRNA synthetase, class Ib, alpha-bundle domain
SuperFamilySSF507152.72E-55508718IPR011035Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain
PfamPF039507.5E-41508699IPR020059Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain
Gene3DG3DSA:2.40.240.104.9E-30516626IPR020056Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain
Gene3DG3DSA:2.40.240.101.4E-27627717IPR020056Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006425Biological Processglutaminyl-tRNA aminoacylation
GO:0048481Biological Processplant ovule development
GO:0005737Cellular Componentcytoplasm
GO:0004819Molecular Functionglutamine-tRNA ligase activity
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 725 aa     Download sequence    Send to blast
MVKEDSNVLD LFLKIGLDEK TAKNTLANNK VTTNLTAVIH EAAVIDGCDR AVGNLLYTVA  60
TKFPANALNH RPTLLQYIVS TKIKTPAQLE AAFAFLASTA SENLKAHDFE EACGVGVEVS  120
KEDIERAVSE VFEEKKTNIL EQRYRINVGE LFGHVRKKLP WADPKVVKEV VDLKLYKLLG  180
ERTAADNEKP VKKKKEKPAK TEDKAKVEET SAPKQSEEEL NPYLIFPTPE ENYKVHTEIY  240
FSDRPVLRAC NSKELLEKHL KVTGGKVLTR FPPEPNGFLH IGHAKAMFVD FGLAKERGGG  300
CYLRFDDTNP EAEKKEYIDH IKEIVGWMGW EPFKITYTSD YFQDLYELAV ELIRRGHAYV  360
DHQFTPHPHA GDKWCIYPSY DYAHCIVDSL ENITHSLCTL EFETRRASYY WLLDALGLYQ  420
PFVWEYSRLN VSNTVMSKRK LNRLVTENWV DGWDDPRLMT LAGLRRRGVT STAINAFVRG  480
IGITRSDSSM IQLSRLEYHI REELNKTAAR TLVVLNPLKV VITNIEAGLV MDLDAKKWPE  540
APADDASSFY KVPFSRVVYI ERTDFRLKDS KDYYGLAPGK SVLLRYAYPI KCTDVILADD  600
KETVLEIRAE YDPSKTIKPK GVLHWVAEPS PGVDPLKVEV RLFDRLFCSE NPAELDDWLG  660
DLSPESKVVI QNAYAVPSVS KATLGDKFQF ERLGYFAVDK DSTSEKLVFN RTVTLRDNYA  720
KGGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1qrs_A1e-9626772427553PROTEIN (GLUTAMINYL-TRNA SYNTHETASE (E.C.6.1.1.18))
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400025668
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020554286.10.0glutamine--tRNA ligase isoform X2
SwissprotP527800.0SYQ_LUPLU; Glutamine--tRNA ligase
TrEMBLM1B5V70.0M1B5V7_SOLTU; Uncharacterized protein
STRINGBra024759.1-P0.0(Brassica rapa)
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]