PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400025666 | ||||||||
Common Name | LOC107059999 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 400aa MW: 44378.9 Da PI: 6.2471 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 32.7 | 1.8e-10 | 137 | 177 | 6 | 50 |
AP2 6 VrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaar 50 Vr +k +g+++ eIrd + + kr++lg+f t+eeA + + + PGSC0003DMP400025666 137 VRKRK-SGKFATEIRDpF-----SkKRIWLGTFNTPEEASEVYQSKK 177 89888.7*********66.....44**************99886655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 13.893 | 128 | 193 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.7E-14 | 137 | 182 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-6 | 137 | 187 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-10 | 137 | 181 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 5.67E-14 | 137 | 173 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 400 aa Download sequence Send to blast |
MKSKIKQDFI GENQEIIEIQ RRIIVKISDP DATESSSDDE KQEKRPKIIV HEIVQKKVKI 60 QSFLLNSKNP LDFYQLPPPR VRKRKYQKKA ISAKSGNPPL MVDSQNLDST KVKTRFSLKN 120 RNFLSFDESS GKLPPMVRKR KSGKFATEIR DPFSKKRIWL GTFNTPEEAS EVYQSKKLEF 180 QEKLEKAKNA NVDKVISAKF ELGSSSSSDP PLMVDSQNTD SSNESVDRLK KAKNAKEKMA 240 ISAKFELGSS SSSGPPLMDD SQNTDSSNES DDILKKAKNA KDKLAISANS EPGSSSSEPI 300 LMVDEIDEQL NKAINANVEM SISAKSELGS SSSDQVDAQT SDSSNGVEES DDEMWMGQWI 360 QISGDKEVKF SQKLGVPVVD NYGFLLGEFS KLDDLSISA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400025666 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975517 | 0.0 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015162710.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor CRF2-like | ||||
TrEMBL | M1B5V5 | 0.0 | M1B5V5_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400037760 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15531 | 5 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28370.1 | 7e-15 | ERF domain protein 11 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400025666 |
Entrez Gene | 107059999 |
Publications ? help Back to Top | |||
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