PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400025662
Common NameLOC102578395
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family CO-like
Protein Properties Length: 448aa    MW: 51218.4 Da    PI: 5.7671
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400025662genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box28.62.8e-091759440
              zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                          r C+++ +k+++++C  ++ +lC++C  + H+       H++v
  PGSC0003DMP400025662 17 RACDNCIKKRARWYCPADDAFLCQNCDASVHSAnplarrHERV 59
                          67*****************************657888888876 PP
2CCT68.32e-23390433144
                   CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                           Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
  PGSC0003DMP400025662 390 REARVTRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 433
                           9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003365.6E-111461IPR000315B-box-type zinc finger
PROSITE profilePS5011910.8221461IPR000315B-box-type zinc finger
CDDcd000211.42E-101761No hitNo description
PfamPF006432.1E-71759IPR000315B-box-type zinc finger
PROSITE profilePS5101716.122390432IPR010402CCT domain
PfamPF062036.1E-18390432IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MVSERKLASA MGGKTTRACD NCIKKRARWY CPADDAFLCQ NCDASVHSAN PLARRHERVR  60
LKTSSLKQPS SSSSSDDYFP DLESPLSISS VSVPSWHRGF TRKVRTPRHG RKASKSAGDG  120
DVIQRNPIHL VPEILSDENS HDENEEEQLL YRVPILDPFV AQLYSSATRN NHEMVESNAT  180
AAADADSEFK LESKEMMLQD DICNVDLNRF HEMLPSEMEL AEFAADVESL LGKGLDDESF  240
DMEGLGLLGV CNKEENSMEY SMISHEKVKI EDEGEIEVVR KTISATTHDH QYNHTHHDID  300
INEDTFEFKF DCDSPMNIIG EDEVIMKDEN KKKILLNLDY EGVLTAWADQ RSPWTNGERP  360
ELDSNDSWPH CMGNYMGIMN ENVTIVDRGR EARVTRYREK RRTRLFSKKI RYEVRKLNAE  420
KRPRMKGRFV KRTNFVTTTT PNYPLVK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1400416RRTRLFSKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400025662
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006344138.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 16-like
TrEMBLM1B5V10.0M1B5V1_SOLTU; B-box zinc finger protein 10
STRINGPGSC0003DMT4000377550.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15392470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.16e-79B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]