PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400025660
Common NameLOC102603595
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 833aa    MW: 91063.7 Da    PI: 6.8377
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400025660genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.53.7e-06530550525
                           --SGGGGTS--TTTTT-SS-S CS
               zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                           +C+ +a  G+C++G++C F+H
  PGSC0003DMP400025660 530 PCDKYASQGFCNRGSSCLFSH 550
                           7******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.596471498IPR000571Zinc finger, CCCH-type
SMARTSM003560.012472497IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-6472496IPR000571Zinc finger, CCCH-type
SMARTSM003560.0027500526IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.615500524IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.009525553IPR000571Zinc finger, CCCH-type
SMARTSM003560.086528552IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-4530550IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-4530551IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 833 aa     Download sequence    Send to blast
MENSQIGALK PLQNLYPLPP RRRLLMSQTY STLLQIISDC PSTDSTTDKQ KLDDNESSKL  60
GTENEVGESV DHRLIRSENL LGTGPAHNES NNLAVQSGSG DRSDGNSRYG YGDFTRARMQ  120
VDLDLSNHTS NAVEGDRGDF ITNDIIDMNC LVHKTLGYNY QMVKEPGNRC STHESEVKEP  180
DPIRPVGLDK DSSIDDVSAG IESCFGADAI ADLSQPAELS GEKMDDSETH FSEEMKHGLR  240
VKEVELETLI SSAGAAESSV HVPMGEEMEE GEAFRDFMVF DESDYDILNH IGNEKKDGAD  300
ESPADISGRE EFAFDVHVNA PQRKDASASS TNDAVDEDNT FVGGEFIRKF REEPQDNTEK  360
VFRSKDVETR KVCVYDTILD SENNAKQVGG DVKLDHPAGS QFDSTSGVNA KKRKHLKVAT  420
ENENIGKNEK KRGPLTKESK ARKKAKRRSK RAEERIKLGV KRLRLPPVVK PKVVKYCRHY  480
LKGRCLEGEA CKFSHDTIPL TKSKPCCHFA RQSCMKGDDC PFDHQLSKYP CDKYASQGFC  540
NRGSSCLFSH EITVKTEAVT SPIASNSLVQ VNTNGMLHKD VNSTSSSAGL VPRNSTERTV  600
LEHVRKPAAS TPKGITFLSH GKSLQGDARK HEEVGLPSKA NGVDNIQKPN GFMKGASTRT  660
PQGMNFLSFG RAPSAEPSGD TLSGVLNMDY GVDKLQLVDM KAKLGSINQM STRTPPGSVP  720
RGVNFLSVDK AVEDRPHPNE CYSASSPIQR RQSAPNTTSS EMPFRQLSSL FPAGQSLIQS  780
AQKCNAEIAS SPKAPFLANT PSSIQKALQS TLAFAAKFDL GVKCGMSNGS RH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1442450KKAKRRSKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400025660
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006344299.10.0PREDICTED: uncharacterized protein LOC102603595
TrEMBLM1B5U90.0M1B5U9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000377530.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77401720
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]