PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400025614
Common NameLOC102603135
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 345aa    MW: 38363.4 Da    PI: 4.4333
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400025614genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.2e-19106155154
                   AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                           s+y+GVr++k +g+W+AeIrd +     + +r++lg++ taeeA  a++  r+++e
  PGSC0003DMP400025614 106 SKYRGVRQRK-WGKWAAEIRDpF-----KsRRVWLGTYSTAEEASHAYEMKRLEFE 155
                           89*******9.**********66.....34**********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-12106156IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-17106154IPR016177DNA-binding domain
CDDcd000183.96E-23106147No hitNo description
Gene3DG3DSA:3.30.730.102.0E-22107155IPR001471AP2/ERF domain
PROSITE profilePS5103220.442107165IPR001471AP2/ERF domain
SMARTSM003808.5E-20107171IPR001471AP2/ERF domain
PRINTSPR003676.3E-10108119IPR001471AP2/ERF domain
PRINTSPR003676.3E-10130146IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MKMFESQRQF QKSKVREESA RPMRKIRIVC DDPEATDSSD DEGVDVSKPK RFVREIYLPV  60
VSSFTLKKIP ETESSCQDSN NGDKKSRGGV LAKTPKTPSC PRPSSSKYRG VRQRKWGKWA  120
AEIRDPFKSR RVWLGTYSTA EEASHAYEMK RLEFEAMAKS NSNTDVSEKS SNNESNNKNR  180
RKVNNVGCVS EDDSAQSLVS HTSHTSPASV FEMDSLTSGS AAVSEVNNND KLVEQLLDDD  240
KLGLMEDSLS LADIGARMDF DTEMDMFFAG NDNFCQSLDD FAVNDFEDLP ICGLDGQLPD  300
DLPDYDFDFD FDGYNDACAW MDDAATAPLM NGTTTTPLNI ALCP*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00217DAPTransfer from AT1G68550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400025614
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755170.0HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006344128.10.0PREDICTED: ethylene-responsive transcription factor ERF118-like
TrEMBLM1B5Q50.0M1B5Q5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000376980.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.21e-32ERF family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]