PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400025605
Common NameLOC102594229
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 746aa    MW: 84895.4 Da    PI: 9.6923
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400025605genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.73.1e-1114101196
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                           ffk+ ++++++k++   +p +f+ ++g +      + le ++g  W+vkl  +++ g+ +l  GW++F +   +  g f++F+++g+s 
  PGSC0003DMP400025605  14 FFKIILSPHASKLH---IPDEFVIKYGAD--LRDVVFLEVPTGAIWQVKL-LQNSNGTKWLNHGWNQFKEYYSIAMGYFLLFQYNGNSH 96 
                           78888777777766...*********877..445788999**********.566666799*************************9999 PP

                           E..EEEE CS
                    B3  90 felvvkv 96 
                           f   v +
  PGSC0003DMP400025605  97 F--SVFI 101
                           9..5555 PP
2B354.81.7e-17645740299
                           EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                    B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                              + p  v+++ +l +p +f++++ ++  e++ + l+ ++grsW+ kl   ++ +  + ++GW++Fv +n+Lke D++vF+l++  e 
  PGSC0003DMP400025605 645 TVSMQPTCVSRKFQLDIPVEFFKKCLNE--EETIVNLRVSNGRSWRAKLLDIQSNCPKMESSGWRDFVLDNNLKEHDTCVFELIDGIEP 731
                           556677778999*************544..4458***************65555555899***********************988555 PP

                           ..EEEEE-S CS
                    B3  91 elvvkvfrk 99 
                            l v++fr+
  PGSC0003DMP400025605 732 MLDVTIFRA 740
                           588888886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.7E-1911105IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.67411105IPR003340B3 DNA binding domain
SuperFamilySSF1019361.55E-1912111IPR015300DNA-binding pseudobarrel domain
CDDcd100172.07E-1412103No hitNo description
SMARTSM010191.1E-1014105IPR003340B3 DNA binding domain
PfamPF023621.0E-814101IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-21641741IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-21641740IPR015300DNA-binding pseudobarrel domain
CDDcd100175.69E-22642739No hitNo description
SMARTSM010196.7E-17644741IPR003340B3 DNA binding domain
PfamPF023621.3E-15644740IPR003340B3 DNA binding domain
PROSITE profilePS5086313.31644741IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 746 aa     Download sequence    Send to blast
MRKRRQTVEM APQFFKIILS PHASKLHIPD EFVIKYGADL RDVVFLEVPT GAIWQVKLLQ  60
NSNGTKWLNH GWNQFKEYYS IAMGYFLLFQ YNGNSHFSVF IFDLSASEIE YLSGPNEDDN  120
NNAKVAHPVS RPNCLAERQE VKLEKPDVEE DLTYATQKHK KKEKNLYNEH CNEVLHPNTT  180
KYNKRKYSLN LEASHRRYPL RSKQVKLEQS KANGSPSYSG KQRPATSLSF PGIQSERKES  240
TRVKLEKANS EEDFCCAVPK AKRGEGNMEK LVKQDRQHNM FDEAHKFKGH CNEAPIVDPS  300
TSKMTTTNQH SKKRTATSLD ASNCRYPLRS KQLKDVKIEK GDVEGRCNEA LVVDPSTSKV  360
TTTNQHSKKR TAASLDASNC RYPLRSKQLK QVKIEKGDVK EHCNKIPVVD PSATKMTTTT  420
RHHEKKTSAS LDTSHCKYPL RNKQLKEVKL EKTNAEEDLL YVAQKAMRKK ANNVKLEKGD  480
VEERSKVGDP SASTTTNQHN EKKTATPLDA SHCRYPLRSK QHIEVKLEQW ETGGNMHNKT  540
PKNKVVADSP YCIRQNLGLP ASSPSYQPVR VKLEKPDNLF CAAEKVKGRE TNNVKLDTGD  600
LEGNLIAASY KGKDSTASEM TVLGKKKMLP SEKHNRDMYF NPHFTVSMQP TCVSRKFQLD  660
IPVEFFKKCL NEEETIVNLR VSNGRSWRAK LLDIQSNCPK MESSGWRDFV LDNNLKEHDT  720
CVFELIDGIE PMLDVTIFRA TTPVS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400025605
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754471e-147HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006350377.10.0PREDICTED: uncharacterized protein LOC102594229
TrEMBLM1B5P70.0M1B5P7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000376880.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA132901215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-22B3 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]