PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400025592
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GeBP
Protein Properties Length: 281aa    MW: 31460.8 Da    PI: 10.452
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400025592genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57360.73.9e-1935122698
                DUF573   6 lwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfk.vsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 
                            ws+eDei++L+Gli+ k+++gk+   d  ++ye +k+s+  k ++   l +K+++L++K+k++ k+     + + + +h+++ f ls 
  PGSC0003DMP400025592  35 AWSKEDEITILKGLIKLKTEKGKN-RFDYVQLYESIKQSVGHKsATALHLQKKVKSLREKYKNNLKN-----SRTPTIPHEEELFYLSD 117
                           5*********************77.568999*********766267789*****************9.....6677889********** PP

                DUF573  94 kiWgs 98 
                           kiWg+
  PGSC0003DMP400025592 118 KIWGK 122
                           ***95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.3E-1735121IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MLRRGKLMPA AAAGGSSINK KMIKKNRASS EKVGAWSKED EITILKGLIK LKTEKGKNRF  60
DYVQLYESIK QSVGHKSATA LHLQKKVKSL REKYKNNLKN SRTPTIPHEE ELFYLSDKIW  120
GKDDHHIMNQ QLTIPSSSLD MNQQFTISSP EESDTTFVGD LGLALTTMSR NQSNPLQVAL  180
QQFKSSSTSP KSVSERCHLQ ERKKKKKRKI ENQEKHRDSS IQSQLEMENR SAVANAKDIN  240
ESATSSQMHT LPDGLTVEVM VKGKVDGKVA SPGKQPWEQG *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1200206ERKKKKK
2202208KKKKKRK
3203208KKKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400025592
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754411e-146HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015165521.11e-131PREDICTED: uncharacterized protein LOC102593685 isoform X3
TrEMBLM1B5N90.0M1B5N9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000376640.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1376078
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.11e-11DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]