PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400025392 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 224aa MW: 24536.4 Da PI: 8.3684 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.1 | 2.5e-19 | 30 | 78 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr ++ +gr++AeIrd ++ ++r++lg+f++ae+Aaka++ a++ l+g PGSC0003DMP400025392 30 FRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDSAEDAAKAYDTAARTLRG 78 8*******.**********883....5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.36E-30 | 29 | 86 | No hit | No description |
SMART | SM00380 | 2.0E-37 | 29 | 92 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.972 | 29 | 86 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.7E-12 | 29 | 78 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.63E-21 | 30 | 87 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.7E-31 | 30 | 86 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.7E-10 | 30 | 41 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.7E-10 | 52 | 68 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MRRGRATSAA AAAAVPVKPD GSGGLNEIRF RGVRKRPWGR FAAEIRDPWK KTRVWLGTFD 60 SAEDAAKAYD TAARTLRGPK AKTNFPLPLY SQHHQFNQSL NPNDRLVDPR LYSQEAPIVC 120 QRPTSSGMSS TVESFSGPRP PRQQTAVLPS RKHPRSPPVE PDDCRSDCDS SSSVVEDGDC 180 EGGNDNIVSS SFRNPLPFDL NFPPPMDDVY ANSNDLYCTA LCL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-20 | 30 | 91 | 6 | 68 | ATERF1 |
3gcc_A | 2e-20 | 30 | 91 | 6 | 68 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00194 | DAP | Transfer from AT1G50640 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400025392 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN125859 | 0.0 | JN125859.1 Solanum tuberosum ethylene response factor ERF4 (ERF4) mRNA, complete cds. | |||
GenBank | JX827408 | 0.0 | JX827408.1 UNVERIFIED: Solanum tuberosum AP2 protein c6-like mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001305578.1 | 1e-160 | ethylene-responsive transcription factor 3-like | ||||
Swissprot | Q9SXS8 | 1e-75 | ERF3_TOBAC; Ethylene-responsive transcription factor 3 | ||||
TrEMBL | M1B5A1 | 1e-163 | M1B5A1_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400037359 | 1e-164 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3330 | 23 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50640.1 | 9e-41 | ethylene responsive element binding factor 3 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400025392 |
Publications ? help Back to Top | |||
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