PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400025209 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 259aa MW: 28601.6 Da PI: 4.2471 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.2 | 1.8e-17 | 52 | 101 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r + +g+Wv+e+r+p +k+ r++lg+f tae+Aa+a++ a+++l+g PGSC0003DMP400025209 52 IYRGIRMRN-SGKWVCEVREP---NKKSRIWLGTFPTAEMAARAHDVAALALRG 101 69****999.7******9998...347*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.6E-12 | 51 | 101 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.36E-31 | 51 | 111 | No hit | No description |
SMART | SM00380 | 1.4E-31 | 52 | 115 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.076 | 52 | 109 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-21 | 52 | 111 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-31 | 52 | 111 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.8E-9 | 53 | 64 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.8E-9 | 75 | 91 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MNIFETYYSD PLILTESSSS SSSSSDEEII LASNNPKRPA GRKKFRETRH PIYRGIRMRN 60 SGKWVCEVRE PNKKSRIWLG TFPTAEMAAR AHDVAALALR GRSACLNFAD SAWRLPIPAS 120 SNSKDIQKAA AEAAEIFRPS SSSEESEEVS GESDYSTPET PENAFSAAAE IFRPSSEESE 180 EVSGESDNST PETPENAFFM NEEAPESSFF MDEEALFFMP GLIANMAEGL MLPPPQCAEM 240 GDHYVEADAY MTLWNYSI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-14 | 50 | 108 | 12 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400025209 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU365384 | 0.0 | EU365384.1 Solanum tuberosum cultivar Umatilla CRT binding factor 3, CRT binding factor 1, CRT binding factor 2A, and CRT binding factor 2B genes, complete cds. | |||
GenBank | EU849673 | 0.0 | EU849673.1 Solanum tuberosum AP2 domain CBF protein (CBF1) mRNA, CBF1-A allele, complete cds. | |||
GenBank | EU849674 | 0.0 | EU849674.1 Solanum tuberosum AP2 domain CBF protein (CBF1) gene, CBF1-A allele, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001274856.1 | 1e-158 | CBF2 | ||||
Swissprot | Q9FJ93 | 1e-72 | DRE1D_ARATH; Dehydration-responsive element-binding protein 1D | ||||
TrEMBL | M1B4U8 | 0.0 | M1B4U8_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400037121 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA263 | 24 | 183 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25480.1 | 5e-61 | dehydration response element B1A |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400025209 |