PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400025076
Common NameLOC102578712
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 277aa    MW: 31100.4 Da    PI: 4.8054
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400025076genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.87.3e-2089138255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f tae+Aa a+++a+++++g
  PGSC0003DMP400025076  89 RYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFETAEGAALAYDEAALRFKG 138
                           7********.**********94....45************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003808.0E-3789152IPR001471AP2/ERF domain
PfamPF008472.5E-1389138IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-3289147IPR001471AP2/ERF domain
PROSITE profilePS5103224.90889146IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-2189147IPR016177DNA-binding domain
PRINTSPR003673.2E-1190101IPR001471AP2/ERF domain
CDDcd000184.25E-2797147No hitNo description
PRINTSPR003673.2E-11112128IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MKRSGSNNER EEKDTSNIFP IYSSARSQQD MSAMVSALSQ VIGNSSSSAG GDSSVDAVHV  60
NPLTLIPQST QQNQSQSSIQ DQGNSERRRY RGVRQRPWGK WAAEIRDPKK AARVWLGTFE  120
TAEGAALAYD EAALRFKGNK AKLNFPERVQ GQFQYFNQHQ FTPATSSNNT FEQNYPNVHH  180
YADLLLRSDN NIDLNFDASP STCYQYSSSG SSFDISQSSV ELPVYDEQQQ VSTNYNYQED  240
EEEDFMKYSG SHFGNSTSSG GPQHDESNWE EYKQEK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2688149163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400025076
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754421e-127HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006341471.10.0PREDICTED: ethylene-responsive transcription factor ERF114
TrEMBLM1B4I90.0M1B4I9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000369340.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.12e-36ERF family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]