PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400025075 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 198aa MW: 22779.6 Da PI: 4.9362 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.6 | 4.1e-20 | 10 | 59 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp+ + +r++lg+f tae+Aa a+++a+++++g PGSC0003DMP400025075 10 RYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFETAEGAALAYDEAALRFKG 59 7********.**********94....45************************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.37E-21 | 10 | 68 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.4E-13 | 10 | 59 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-32 | 10 | 68 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.908 | 10 | 67 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.0E-37 | 10 | 73 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-11 | 11 | 22 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.28E-27 | 18 | 68 | No hit | No description |
PRINTS | PR00367 | 1.9E-11 | 33 | 49 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MYIGNSERRR YRGVRQRPWG KWAAEIRDPK KAARVWLGTF ETAEGAALAY DEAALRFKGN 60 KAKLNFPERV QGQFQYFNQH QFTPATSSNN TFEQNYPNVH HYADLLLRSD NNIDLNFDAS 120 PSTCYQYSSS GSSFDISQSS VELPVYDEQQ QVSTNYNYQE DEEEDFMKYS GSHFGNSTSS 180 GGPQHDESNW EEYKQEK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-26 | 9 | 70 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 4e-26 | 11 | 70 | 6 | 66 | ATERF1 |
3gcc_A | 4e-26 | 11 | 70 | 6 | 66 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400025075 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 1e-127 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006341471.1 | 1e-145 | PREDICTED: ethylene-responsive transcription factor ERF114 | ||||
TrEMBL | M1B4I8 | 1e-146 | M1B4I8_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400036934 | 1e-145 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13330.1 | 6e-30 | related to AP2 6l |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400025075 |
Publications ? help Back to Top | |||
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