PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400025075
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 198aa    MW: 22779.6 Da    PI: 4.9362
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400025075genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.64.1e-201059255
                   AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                          +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f tae+Aa a+++a+++++g
  PGSC0003DMP400025075 10 RYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFETAEGAALAYDEAALRFKG 59
                          7********.**********94....45************************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.37E-211068IPR016177DNA-binding domain
PfamPF008471.4E-131059IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-321068IPR001471AP2/ERF domain
PROSITE profilePS5103224.9081067IPR001471AP2/ERF domain
SMARTSM003808.0E-371073IPR001471AP2/ERF domain
PRINTSPR003671.9E-111122IPR001471AP2/ERF domain
CDDcd000183.28E-271868No hitNo description
PRINTSPR003671.9E-113349IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MYIGNSERRR YRGVRQRPWG KWAAEIRDPK KAARVWLGTF ETAEGAALAY DEAALRFKGN  60
KAKLNFPERV QGQFQYFNQH QFTPATSSNN TFEQNYPNVH HYADLLLRSD NNIDLNFDAS  120
PSTCYQYSSS GSSFDISQSS VELPVYDEQQ QVSTNYNYQE DEEEDFMKYS GSHFGNSTSS  180
GGPQHDESNW EEYKQEK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-26970163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A4e-261170666ATERF1
3gcc_A4e-261170666ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400025075
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754421e-127HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006341471.11e-145PREDICTED: ethylene-responsive transcription factor ERF114
TrEMBLM1B4I81e-146M1B4I8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000369341e-145(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.16e-30related to AP2 6l
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]