PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400024926
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Trihelix
Protein Properties Length: 323aa    MW: 36590.7 Da    PI: 5.3836
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400024926genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix73.73.2e-2328116180
              trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 
                           rWt+qe+l+Li++++  eer  rg+         + +p+W++vs+++r++g  r+p+qC+++w+n+  ++kkik++e + +  s+s + 
  PGSC0003DMP400024926  28 RWTRQETLVLIQGKKIAEERAHRGRkstsvfgsdKPEPKWDSVSSYCRQHGADRGPVQCRKRWSNMISDFKKIKTWETQTNGSSESYWI 116
                           8**************999999987556677777699******************************************97555555565 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.1432194IPR017877Myb-like domain
PfamPF138372.0E-1227114No hitNo description
Gene3DG3DSA:1.10.10.601.1E-52795IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MNENTAMLAD GQQKPTEDGK SKTPRHSRWT RQETLVLIQG KKIAEERAHR GRKSTSVFGS  60
DKPEPKWDSV SSYCRQHGAD RGPVQCRKRW SNMISDFKKI KTWETQTNGS SESYWIISND  120
LRREKRLPGS FDREVYNVLD GKEFTAEAYQ LALVTITTDE KLDYGVETVE EEEAEEGEEE  180
NDNVSHTGEY TMEDDVMPPA AEEVGSSPLK EHIVIDKKAK SIPSPVPRSA EGEQPGSDFW  240
NSPMFKDRVK KRRLSPDGCI DSNLGSKLLK TLEQNTNMLH SQLDAQMENR QRDREQQKEQ  300
TNSLIAVLNK VADAVARVAD KM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400024926
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019068691.10.0trihelix transcription factor ASR3-like
TrEMBLM1B4650.0M1B465_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000367570.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17862460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.14e-64Trihelix family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]