PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400024835
Common NameLOC102602553, LOC102602893
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 160aa    MW: 18282.5 Da    PI: 7.5054
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400024835genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.9e-18754253
                   AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53
                          +y+GVr+++ +g+Wv+eIr+ps    ++r++lg+f t e+Aa+a+++a++ +
  PGSC0003DMP400024835  7 RYRGVRQRH-WGSWVSEIRHPSL---KTRIWLGTFETSEDAARAYDEAARLM 54
                          69******9.**********944...5*********************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.95E-34666No hitNo description
PfamPF008473.9E-12756IPR001471AP2/ERF domain
SMARTSM003802.0E-40770IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-21766IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.0E-33765IPR001471AP2/ERF domain
PROSITE profilePS5103220.903764IPR001471AP2/ERF domain
PRINTSPR003675.6E-11819IPR001471AP2/ERF domain
PRINTSPR003675.6E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MSRPQQRYRG VRQRHWGSWV SEIRHPSLKT RIWLGTFETS EDAARAYDEA ARLMCGSTAR  60
TNFPYNATES TRFLSSALIA KLQKCHMTSL TATSKRPGKT KLEDKKEKEI STNRGDGEER  120
QSESASQQYM KALEDEHIEQ MIEELLDYGS IEMCSVLNE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-18864663ATERF1
3gcc_A8e-18864663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400024835
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB8897410.0AB889741.1 Solanum lycopersicum ERF52 mRNA for AP2/ERF transcription factor SlERF52, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006341371.11e-117PREDICTED: ethylene-responsive transcription factor ERF003-like
RefseqXP_006341372.11e-117PREDICTED: ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW52e-63ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLM1B3Y41e-115M1B3Y4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000366341e-116(Solanum tuberosum)
STRINGPGSC0003DMT4000368171e-116(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13622476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.11e-54ERF family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]