PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400024835 | ||||||||
Common Name | LOC102602553, LOC102602893 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 160aa MW: 18282.5 Da PI: 7.5054 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.3 | 1.9e-18 | 7 | 54 | 2 | 53 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 +y+GVr+++ +g+Wv+eIr+ps ++r++lg+f t e+Aa+a+++a++ + PGSC0003DMP400024835 7 RYRGVRQRH-WGSWVSEIRHPSL---KTRIWLGTFETSEDAARAYDEAARLM 54 69******9.**********944...5*********************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.95E-34 | 6 | 66 | No hit | No description |
Pfam | PF00847 | 3.9E-12 | 7 | 56 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-40 | 7 | 70 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-21 | 7 | 66 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-33 | 7 | 65 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.903 | 7 | 64 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.6E-11 | 8 | 19 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.6E-11 | 30 | 46 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MSRPQQRYRG VRQRHWGSWV SEIRHPSLKT RIWLGTFETS EDAARAYDEA ARLMCGSTAR 60 TNFPYNATES TRFLSSALIA KLQKCHMTSL TATSKRPGKT KLEDKKEKEI STNRGDGEER 120 QSESASQQYM KALEDEHIEQ MIEELLDYGS IEMCSVLNE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 8e-18 | 8 | 64 | 6 | 63 | ATERF1 |
3gcc_A | 8e-18 | 8 | 64 | 6 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400024835 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB889741 | 0.0 | AB889741.1 Solanum lycopersicum ERF52 mRNA for AP2/ERF transcription factor SlERF52, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006341371.1 | 1e-117 | PREDICTED: ethylene-responsive transcription factor ERF003-like | ||||
Refseq | XP_006341372.1 | 1e-117 | PREDICTED: ethylene-responsive transcription factor ERF003-like | ||||
Swissprot | Q94AW5 | 2e-63 | ERF03_ARATH; Ethylene-responsive transcription factor ERF003 | ||||
TrEMBL | M1B3Y4 | 1e-115 | M1B3Y4_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400036634 | 1e-116 | (Solanum tuberosum) | ||||
STRING | PGSC0003DMT400036817 | 1e-116 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1362 | 24 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25190.1 | 1e-54 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400024835 |
Entrez Gene | 102602553 | 102602893 |
Publications ? help Back to Top | |||
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