PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400024514
Common NameLOC102588590
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 477aa    MW: 53068.5 Da    PI: 6.9245
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400024514genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.26.6e-173481148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g+WTt Ed +l ++vk++G g+W+++ r  g+ R++k+c++rw ++l
  PGSC0003DMP400024514 34 KGPWTTTEDAILMEYVKKHGEGNWNAVQRNSGLMRCGKSCRLRWANHL 81
                          79******************************************9986 PP

2Myb_DNA-binding49.31.1e-1587130146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           +g+++ eE+ l+v+++++lG++ W++ a+ ++ gRt++++k++w++
  PGSC0003DMP400024514  87 KGAFSLEEERLIVELHAKLGNK-WARMAAQLP-GRTDNEIKNYWNT 130
                           799*******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.9522981IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.7E-233184IPR009057Homeodomain-like
SuperFamilySSF466893.37E-2932128IPR009057Homeodomain-like
SMARTSM007171.2E-123383IPR001005SANT/Myb domain
PfamPF002491.1E-143481IPR001005SANT/Myb domain
CDDcd001671.72E-103681No hitNo description
PROSITE profilePS5129425.04282136IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.3E-2485135IPR009057Homeodomain-like
SMARTSM007171.5E-1586134IPR001005SANT/Myb domain
PfamPF002491.7E-1487130IPR001005SANT/Myb domain
CDDcd001674.16E-1189132No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MAPSGGGVNK NNGTSISRNH NGGGGGLGAR QLKKGPWTTT EDAILMEYVK KHGEGNWNAV  60
QRNSGLMRCG KSCRLRWANH LRPHLKKGAF SLEEERLIVE LHAKLGNKWA RMAAQLPGRT  120
DNEIKNYWNT RLKRRQRAGL PIYPQDIQPQ NYQQDQNQQQ HSTNNIPSPF DNHQNSNYNN  180
NSPLSLLDIF NPSTMKPSRN IIPHQYQFNN NPSSPFLTNT NNINNQVKFF RDPRVSLSLT  240
LASSMKNSQL SSMVAPVPNN FSQGYSSSMP VPPLQHTYPN FTTTTRPYTA ISSNPNGLIL  300
GMGIEHRSVQ SSVPRNTSTL SDHADNNYAV NHGLSRGNSG LLEDLLEESH TLTRGEKIEE  360
NCPINENEDN NKGKLIWEEY GLTEEAADAI LTEESTYNFA HKHSEDSSSP NSSSGITTKE  420
ASLENMGNQV DDDIMRFLDN FPLGVPVPDW CDDQQNTSNG QSFECDQIQL SSKSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-29281351107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400024514
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2127660.0AC212766.1 Solanum lycopersicum DNA sequence from clone LE_HBa-90D9 on chromosome 12, complete sequence.
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006352041.10.0PREDICTED: transcription factor MYB51-like
TrEMBLM1B3950.0M1B395_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000360860.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.26e-68myb domain protein 101
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]