PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PGSC0003DMP400024514 | ||||||||
Common Name | LOC102588590 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 477aa MW: 53068.5 Da PI: 6.9245 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.2 | 6.6e-17 | 34 | 81 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WTt Ed +l ++vk++G g+W+++ r g+ R++k+c++rw ++l PGSC0003DMP400024514 34 KGPWTTTEDAILMEYVKKHGEGNWNAVQRNSGLMRCGKSCRLRWANHL 81 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 49.3 | 1.1e-15 | 87 | 130 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+++ eE+ l+v+++++lG++ W++ a+ ++ gRt++++k++w++ PGSC0003DMP400024514 87 KGAFSLEEERLIVELHAKLGNK-WARMAAQLP-GRTDNEIKNYWNT 130 799*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.952 | 29 | 81 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-23 | 31 | 84 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.37E-29 | 32 | 128 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-12 | 33 | 83 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-14 | 34 | 81 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.72E-10 | 36 | 81 | No hit | No description |
PROSITE profile | PS51294 | 25.042 | 82 | 136 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.3E-24 | 85 | 135 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-15 | 86 | 134 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-14 | 87 | 130 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.16E-11 | 89 | 132 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 477 aa Download sequence Send to blast |
MAPSGGGVNK NNGTSISRNH NGGGGGLGAR QLKKGPWTTT EDAILMEYVK KHGEGNWNAV 60 QRNSGLMRCG KSCRLRWANH LRPHLKKGAF SLEEERLIVE LHAKLGNKWA RMAAQLPGRT 120 DNEIKNYWNT RLKRRQRAGL PIYPQDIQPQ NYQQDQNQQQ HSTNNIPSPF DNHQNSNYNN 180 NSPLSLLDIF NPSTMKPSRN IIPHQYQFNN NPSSPFLTNT NNINNQVKFF RDPRVSLSLT 240 LASSMKNSQL SSMVAPVPNN FSQGYSSSMP VPPLQHTYPN FTTTTRPYTA ISSNPNGLIL 300 GMGIEHRSVQ SSVPRNTSTL SDHADNNYAV NHGLSRGNSG LLEDLLEESH TLTRGEKIEE 360 NCPINENEDN NKGKLIWEEY GLTEEAADAI LTEESTYNFA HKHSEDSSSP NSSSGITTKE 420 ASLENMGNQV DDDIMRFLDN FPLGVPVPDW CDDQQNTSNG QSFECDQIQL SSKSSS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-29 | 28 | 135 | 1 | 107 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | PGSC0003DMP400024514 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC212766 | 0.0 | AC212766.1 Solanum lycopersicum DNA sequence from clone LE_HBa-90D9 on chromosome 12, complete sequence. | |||
GenBank | HG975451 | 0.0 | HG975451.1 Solanum pennellii chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006352041.1 | 0.0 | PREDICTED: transcription factor MYB51-like | ||||
TrEMBL | M1B395 | 0.0 | M1B395_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400036086 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G32460.2 | 6e-68 | myb domain protein 101 |
Link Out ? help Back to Top | |
---|---|
Phytozome | PGSC0003DMP400024514 |
Entrez Gene | 102588590 |
Publications ? help Back to Top | |||
---|---|---|---|
|