PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400024469 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bHLH | ||||||||
Protein Properties | Length: 443aa MW: 49217.4 Da PI: 6.3168 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 16.8 | 1.2e-05 | 339 | 376 | 12 | 54 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L PGSC0003DMP400024469 339 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 376 677888999*******998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.973 | 327 | 376 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.01E-5 | 337 | 380 | No hit | No description |
SuperFamily | SSF47459 | 1.7E-11 | 337 | 390 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.9E-9 | 341 | 384 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 443 aa Download sequence Send to blast |
MGDEYQASVC GGNWWNSSRS IFGSSLCASS VPLGNSNFAW TNDHLLDMKS SCRSNDESGN 60 SDESVVLQEL PKHDSTLQIL GIGLNSSSTS DNNWSHTLMH GNDRSESSYP SILQEDLNSS 120 MNYQQESGVD CSSNSFKQDF TLGMNHPITS STNTHHHDQT FPMNSSFPNY PSALLQTLFD 180 NDPPPPPPQQ QQQQLQQSLF ATNNNQPMNF PTSSLNYRPD LNDFSPSMSK FRNSLLIPKQ 240 STPSDHFPNY SLNVTTSLYN TSSATSLNNM RGTLMPCMHP QILQSPSFNE NSRAPNVTPK 300 CKVEDLRESR VTKKSVNNEA TLKRARIETP SPLPTFKVRK EKLGDRITAL QQLVSPFGKT 360 DTASVLHEAI EYIKFLHDQV NALSTPYLKN GSSTQHQQIV DKVKEEDLRS RGLCLVPISS 420 TFPVATETST DFWTPNFGGT FR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400024469 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 0.0 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004232764.1 | 0.0 | transcription factor bHLH112 | ||||
TrEMBL | M1B350 | 0.0 | M1B350_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400036021 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA860 | 24 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20640.1 | 9e-57 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400024469 |
Publications ? help Back to Top | |||
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