PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400024468
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 384aa    MW: 42730.2 Da    PI: 6.3688
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400024468genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.11e-053393761254
                           HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  PGSC0003DMP400024468 339 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 376
                           677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.973327376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-10337381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.03E-6337380No hitNo description
Gene3DG3DSA:4.10.280.102.4E-8341380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MGDEYQASVC GGNWWNSSRS IFGSSLCASS VPLGNSNFAW TNDHLLDMKS SCRSNDESGN  60
SDESVVLQEL PKHDSTLQIL GIGLNSSSTS DNNWSHTLMH GNDRSESSYP SILQEDLNSS  120
MNYQQESGVD CSSNSFKQDF TLGMNHPITS STNTHHHDQT FPMNSSFPNY PSALLQTLFD  180
NDPPPPPPQQ QQQQLQQSLF ATNNNQPMNF PTSSLNYRPD LNDFSPSMSK FRNSLLIPKQ  240
STPSDHFPNY SLNVTTSLYN TSSATSLNNM RGTLMPCMHP QILQSPSFNE NSRAPNVTPK  300
CKVEDLRESR VTKKSVNNEA TLKRARIETP SPLPTFKVRK EKLGDRITAL QQLVSPFGKT  360
DTASVLHEAI EYIKFLHDQV NVR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400024468
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004232764.10.0transcription factor bHLH112
TrEMBLM1B3490.0M1B349_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000360210.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.26e-32bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]