PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400024309
Common NameLOC107061456
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 232aa    MW: 26723.2 Da    PI: 6.6462
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400024309genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.25.8e-161562148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g WT eEd++l+ +v+++G  +W+  ++  g+ R++k+c++rw++yl
  PGSC0003DMP400024309 15 KGTWTLEEDKKLAAYVTKYGCWNWRQLPKFAGLSRCGKSCRLRWLNYL 62
                          799*****************99************************97 PP
2Myb_DNA-binding49.87.8e-1668111146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           rg+ + eEd+++ +++++ G++ W++Ia +++ gR+++++k++w++
  PGSC0003DMP400024309  68 RGNYSREEDQIIMKLHAEIGNK-WSAIAIHLP-GRSDNEIKNHWHT 111
                           8999******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.7141062IPR017930Myb domain
SuperFamilySSF466892.6E-2912109IPR009057Homeodomain-like
SMARTSM007176.8E-101464IPR001005SANT/Myb domain
PfamPF002496.2E-141562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.4E-221669IPR009057Homeodomain-like
CDDcd001679.90E-81762No hitNo description
PROSITE profilePS5129424.17963117IPR017930Myb domain
SMARTSM007171.2E-1467115IPR001005SANT/Myb domain
PfamPF002491.0E-1468111IPR001005SANT/Myb domain
CDDcd001674.96E-970113No hitNo description
Gene3DG3DSA:1.10.10.601.1E-2470116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MARTRCYDKK SGLKKGTWTL EEDKKLAAYV TKYGCWNWRQ LPKFAGLSRC GKSCRLRWLN  60
YLQPNIKRGN YSREEDQIIM KLHAEIGNKW SAIAIHLPGR SDNEIKNHWH TSLKKRSKHE  120
LTCNGKKREA NNVNKKSDED QNITPNESCS EVSSCVTTDQ NMENIMDGEC EIIQEELFEE  180
SIGNFWTEPF LIDSFTSTTS SSEFCVPLEV EYGLFVSPFS PIMCYDEFLC S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27131165107B-MYB
1h8a_C3e-271311625127MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400024309
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015166202.11e-174PREDICTED: transcription factor MYB114-like
TrEMBLM1B2S31e-172M1B2S3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000357481e-173(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.11e-54myb domain protein 14
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]