PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400024296
Common NameLOC102582537
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 298aa    MW: 32531.4 Da    PI: 8.8144
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400024296genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.23.2e-211766255
                   AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          +y+GVr ++ +gr++AeIrdp   +k++r++lg+f+taeeAaka++aa+++++g
  PGSC0003DMP400024296 17 HYRGVRKRP-WGRYAAEIRDP---NKKTRVWLGTFDTAEEAAKAYDAAAREFRG 66
                          6********.**********9...347************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.77E-221775IPR016177DNA-binding domain
PROSITE profilePS5103224.1711774IPR001471AP2/ERF domain
CDDcd000183.18E-191774No hitNo description
Gene3DG3DSA:3.30.730.103.7E-321774IPR001471AP2/ERF domain
SMARTSM003801.6E-391780IPR001471AP2/ERF domain
PfamPF008476.0E-151766IPR001471AP2/ERF domain
PRINTSPR003672.7E-111829IPR001471AP2/ERF domain
PRINTSPR003672.7E-114056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MAMKEKVTNG VKKKEVHYRG VRKRPWGRYA AEIRDPNKKT RVWLGTFDTA EEAAKAYDAA  60
AREFRGLKAK TNFPFPSEDQ SPNDSSGSPN ESFSGENGVH ALPELDHTRR LEEGGGGYTE  120
VGLVRNGFPI FRQQPAMMSN RSSPAESSIG ETVVQSPFEL NLTRRLEGGG NGGRSAEVGL  180
LRNGFPMFLH QPASHAELDL TRNLGDHVRN GFPISHRQPA VAVLPNGQPI LLYDGNLVRT  240
GLVNRPQPYR FEPVATAAEF NGVTGRVVDS ESDSSSVVGL GRRELNLDLN LAPPMEV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-201074772Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate. May regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:12654868, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400024296
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by ethephon (ethylene-releasing compound) in buds and to lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemical transient expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Not influenced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by a protein kinase cascade, and to be negatively regulated by protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU5942441e-48GU594244.1 Solanum nigrum clone 109 ethylene-responsive transcription factor (ERF1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006351942.10.0PREDICTED: ethylene-responsive transcription factor 4-like
SwissprotQ404774e-49ERF4_TOBAC; Ethylene-responsive transcription factor 4
TrEMBLM1B2R00.0M1B2R0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000357310.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.11e-30erf domain protein 9
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Ogata T, et al.
    Involvement of NtERF3 in the cell death signalling pathway mediated by SIPK/WIPK and WRKY1 in tobacco plants.
    Plant Biol (Stuttg), 2015. 17(5): p. 962-72
    [PMID:25996234]