PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400024076
Common NameLOC102589040
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 348aa    MW: 39774.2 Da    PI: 6.8444
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400024076genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.1e-05184203120
                           EEETTTTEEESSHHHHHHHH CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                           ++Cp C k+F+r  n++ H+
  PGSC0003DMP400024076 184 FSCPLCFKTFNRYNNMQMHM 203
                           89*****************9 PP
2zf-C2H214.69.9e-05268290123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           + C +Cgk F  + + ++H +++
  PGSC0003DMP400024076 268 FMCRKCGKAFAVRGDWRTHEKNC 290
                           89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.61184206IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.9E-5184203IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.66184211IPR007087Zinc finger, C2H2
PROSITE patternPS000280186206IPR007087Zinc finger, C2H2
SuperFamilySSF576671.77E-6250288No hitNo description
Gene3DG3DSA:3.30.160.609.3E-6264288IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.808268288IPR007087Zinc finger, C2H2
SMARTSM0035549268288IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MGDPYTNYFH GWFNNFNPIY HSSSSSTPPP PHPFSSYYNN NYILSSSTNF QYLQPPPSPP  60
LKEPLPLLSL SPIHQHQDNY SSTMEVDHNN TNYYSKVNKD HESFGDEENQ DDESVSVALQ  120
LGLPNLSPHD VISRINSSTN KEEVQEEHEQ EVVTLANIGY SSTLHKGQYW IPTPAQILIG  180
PTQFSCPLCF KTFNRYNNMQ MHMWGHGSQY RKGPESLRGT QPTAMLRLPC FCCSPGCRNN  240
IDHPRAKPLK DFRTLQTHYK RKHGIKPFMC RKCGKAFAVR GDWRTHEKNC GKLWYCTCGS  300
DFKHKRSLKD HIKAFGNGHE AYGIDCLEEE DEPASEIEQD NDHDPSN*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400024076
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006354269.10.0PREDICTED: zinc finger protein WIP2
SwissprotQ9SVY11e-134ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLM1B2850.0M1B285_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000354080.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-129C2H2 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  3. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]