PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400024075 | ||||||||
Common Name | LOC102589360 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 175aa MW: 20285.9 Da PI: 6.755 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 45.3 | 2.2e-14 | 45 | 95 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr + +g++ Ird + ng r++lg+f+ aeeA a+++a+ +++g PGSC0003DMP400024075 45 NYRGVRKRQ-WGKFPTKIRDSTRNG--VRVWLGTFDNAEEAVLAYDQAAFAMRG 95 59****888.**********44465..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.22E-25 | 44 | 104 | No hit | No description |
PROSITE profile | PS51032 | 20.508 | 45 | 103 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.7E-27 | 45 | 104 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.25E-20 | 45 | 105 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 7.3E-9 | 45 | 95 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.2E-30 | 45 | 109 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-12 | 46 | 57 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-12 | 85 | 105 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MSWYVYFLVV VAEGSSLETV NSSSSYGIKE EEVTSYEEDR EKEKNYRGVR KRQWGKFPTK 60 IRDSTRNGVR VWLGTFDNAE EAVLAYDQAA FAMRGSMAIL NFPVEIVNES LSEIKCRFYE 120 NCSPVIDELK KRYSMRRKSV SRKNRTRKDV VVFEDLGVEY LEELLISSQS ITNW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-27 | 42 | 106 | 2 | 66 | ATERF1 |
3gcc_A | 4e-27 | 42 | 106 | 2 | 66 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 141 | 148 | RKNRTRKD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400024075 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975521 | 0.0 | HG975521.1 Solanum lycopersicum chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006354270.1 | 1e-124 | PREDICTED: ethylene-responsive transcription factor 1B-like | ||||
Swissprot | A0A3Q7I5Y9 | 8e-91 | ERFC3_SOLLC; Ethylene-response factor C3 | ||||
TrEMBL | M1B284 | 1e-123 | M1B284_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400035406 | 1e-124 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 8e-57 | ethylene response factor 1 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400024075 |
Entrez Gene | 102589360 |
Publications ? help Back to Top | |||
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