PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400024044 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | AP2 | ||||||||
Protein Properties | Length: 552aa MW: 60887.5 Da PI: 6.4642 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 35.6 | 2.3e-11 | 179 | 235 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +e+Aa+a++ a++k++g PGSC0003DMP400024044 179 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 235 57*******************5444.2455536655.779999**************98 PP | |||||||
2 | AP2 | 47.5 | 4.6e-15 | 280 | 329 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t+eeAa+a++ a+ k++g PGSC0003DMP400024044 280 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFTTEEEAAEAYDIAAIKFRG 329 9***************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 9.2E-9 | 179 | 235 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.63E-20 | 179 | 245 | No hit | No description |
SuperFamily | SSF54171 | 7.85E-15 | 179 | 245 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 17.504 | 180 | 243 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.4E-12 | 180 | 244 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.2E-23 | 180 | 249 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-6 | 181 | 192 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-18 | 278 | 338 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.59E-24 | 278 | 337 | No hit | No description |
PROSITE profile | PS51032 | 19.296 | 279 | 337 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.3E-18 | 279 | 337 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-31 | 279 | 343 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.8E-9 | 280 | 329 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-6 | 319 | 339 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000723 | Biological Process | telomere maintenance | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010449 | Biological Process | root meristem growth | ||||
GO:0019827 | Biological Process | stem cell population maintenance | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 552 aa Download sequence Send to blast |
MNSNNWLSFP LSPTHSSLPP HLQNDQSHHF SLGLVNETID NPFQNQEWNL MNTQGSNEVP 60 KVADFLGMNK SENQSELIPY NEIQANDSDY LFQNNHLMPS MQNALAPPPT SNYDLQENAC 120 NIQSLTLSMG SGKGSTSETS ASPSATAATA SASAENSNNT SIVEAAPRRT LDTFGQRTSI 180 YRGVTRHRWT GRYEAHLWDN SCRREGQSRK GRQGGYDKEE KAARAYDLAA LKYWGTSTTT 240 NFPISNYEKE CEDMKHMTRQ EFVAAIRRKS SGFSRGASMY RGVTRHHQHG RWQARIGRVA 300 GNKDLYLGTF TTEEEAAEAY DIAAIKFRGL NAVTNFDMNR YDVKAILESN TLPIGGGAAK 360 RLKEAQALES SRKRDQEMMA LNSSFQYGNS NPLQAYPLMQ QQPSFDNSQP LLTLQNHDIS 420 QYNIQDSSSH FHQSYLQTQL QLQNNSHQVL YNNYLQNNQV FLHGLMNNNE GSSSGSYSTG 480 GYFGNSPGLG GMSSNSTSGN NGGGGGGSGS VAHEEVALVK VDYDNIPSYN GWSGESSVQG 540 SNPGVFSMWN E* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Master regulator of basal/root fate. Essential for root quiescent center (QC) and columella specification, stem cell activity, as well as for establishment of the stem cell niche during embryogenesis. Modulates the root polar auxin transport by regulating the distribution of PIN genes. Essential role in respecifying pattern and polarity in damaged roots. Direct target of the transcriptional corepressor TPL. Expression levels and patterns regulated post-transcriptionally by root meristem growth factors (RGFs). {ECO:0000250, ECO:0000269|PubMed:15454085, ECO:0000269|PubMed:15635403, ECO:0000269|PubMed:16424342, ECO:0000269|PubMed:20190735}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400024044 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin accumulation. {ECO:0000269|PubMed:15454085}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975523 | 0.0 | HG975523.1 Solanum lycopersicum chromosome ch11, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015167206.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor PLT2 | ||||
Swissprot | Q5YGP7 | 0.0 | PLET2_ARATH; AP2-like ethylene-responsive transcription factor PLT2 | ||||
TrEMBL | M1B265 | 0.0 | M1B265_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400035354 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2246 | 24 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20840.1 | 0.0 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400024044 |