PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PGSC0003DMP400023930 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | NF-YB | ||||||||
Protein Properties | Length: 67aa MW: 7528.78 Da PI: 7.4109 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 54.4 | 3.1e-17 | 16 | 66 | 2 | 54 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkc 54 +eqdrf+P +v+ri +++lP +akis+d+k t++ec+s fi ++t+ea+ +c PGSC0003DMP400023930 16 EEQDRFMP--DVGRITHRTLPPHAKISDDTKRTMHECISVFICLITCEANARC 66 69****99..8***************************************999 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 7.9E-14 | 14 | 66 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 7.33E-8 | 18 | 66 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.9E-6 | 25 | 66 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 67 aa Download sequence Send to blast |
MKYAHLNQAV VGCIIEEQDR FMPDVGRITH RTLPPHAKIS DDTKRTMHEC ISVFICLITC 60 EANARC* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 2e-16 | 15 | 66 | 6 | 59 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. Plays a role in the regulation of the embryogenesis. Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000269|PubMed:12509518, ECO:0000269|PubMed:17322342}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | PGSC0003DMP400023930 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006356441.2 | 5e-27 | PREDICTED: nuclear transcription factor Y subunit B-4-like | ||||
Refseq | XP_015168329.1 | 5e-27 | PREDICTED: nuclear transcription factor Y subunit B-4-like | ||||
Refseq | XP_015168330.1 | 5e-27 | PREDICTED: nuclear transcription factor Y subunit B-4-like | ||||
Refseq | XP_015168331.1 | 5e-27 | PREDICTED: nuclear transcription factor Y subunit B-4-like | ||||
Swissprot | Q84W66 | 4e-17 | NFYB6_ARATH; Nuclear transcription factor Y subunit B-6 | ||||
TrEMBL | M1B1Z1 | 3e-42 | M1B1Z1_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400035193 | 5e-43 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G47670.1 | 2e-19 | nuclear factor Y, subunit B6 |
Link Out ? help Back to Top | |
---|---|
Phytozome | PGSC0003DMP400023930 |