PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400023891
Common NameLOC107062329
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 289aa    MW: 32225.8 Da    PI: 6.406
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400023891genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.25.1e-1096140347
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           +WT+eE+  ++++ + + +g+W++I+r+   +Rt+ q+  + qk+
  PGSC0003DMP400023891  96 PWTEEEHRSFLRGLEIYEKGDWRSISRHCVMTRTPMQVATHSQKF 140
                           8*****************************99********99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0071736859IPR001005SANT/Myb domain
SuperFamilySSF466895.91E-61062IPR009057Homeodomain-like
PROSITE profilePS5129411.47789145IPR017930Myb domain
SuperFamilySSF466891.94E-1491145IPR009057Homeodomain-like
SMARTSM007171.3E-793143IPR001005SANT/Myb domain
TIGRFAMsTIGR015578.9E-1194143IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.606.1E-995136IPR009057Homeodomain-like
PfamPF002499.5E-896139IPR001005SANT/Myb domain
CDDcd001678.13E-896136No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MSTKQKCYSS FWTRDADKIF ENTLAIYSKD INLLTKIQEA LPGKLLDDIL DHYNILVEDV  60
KAIESGLVPL PNYPKMQGDS SKKSSKADVE RQRGTPWTEE EHRSFLRGLE IYEKGDWRSI  120
SRHCVMTRTP MQVATHSQKF FKRLNATKKG NRKPRAKASV LDITSVDVEA AGTSQVRTTV  180
DMIGHACRGS QTLPTTNNES MLPGERTNAE QMIAVAGGES SDHNVALING MNSLFPYAYD  240
EFIIGIDDLI MEQEDVNEPE NKLLLLLSYL PVSPHLALVL LAIKASLI*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400023891
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015168347.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ9FNN64e-41SRM1_ARATH; Transcription factor SRM1
TrEMBLM1B1V70.0M1B1V7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000351430.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44541329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.13e-43MYB family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  3. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]