PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400023883 | ||||||||
Common Name | LOC102591700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NF-YB | ||||||||
Protein Properties | Length: 225aa MW: 25029.7 Da PI: 4.7194 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 114.2 | 7.1e-36 | 54 | 144 | 2 | 94 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkky 90 +eqd+f+P nv+rim++++P + kis+dak t+++c+sefi fvt ea+ +cqre+r+ti+ +d+ w +++Gf+dy+epl +yl +y PGSC0003DMP400023883 54 QEQDQFMP--NVARIMHRTFPPHIKISDDAKWTMHDCISEFICFVTYEANARCQREQRNTITDEDVHWVTSKFGFDDYIEPLPLYLPRY 140 799***99..******************************************************************************* PP NF-YB 91 rele 94 e + PGSC0003DMP400023883 141 HEDD 144 9866 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 5.0E-30 | 53 | 145 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.61E-22 | 59 | 143 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.4E-14 | 62 | 119 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 4.3E-7 | 85 | 103 | No hit | No description |
PRINTS | PR00615 | 4.3E-7 | 104 | 122 | No hit | No description |
PRINTS | PR00615 | 4.3E-7 | 123 | 141 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MDNGNHVGGS GNGGFHSYRR SPQPNPAHSP SSDMEMILEL PSHLNQAVVE GIIQEQDQFM 60 PNVARIMHRT FPPHIKISDD AKWTMHDCIS EFICFVTYEA NARCQREQRN TITDEDVHWV 120 TSKFGFDDYI EPLPLYLPRY HEDDGGECGS LIGESLLKRP MVDTASNCNI TPYHQPPNFP 180 MAHHHLGYPP PMGNGDMQGD ASNGSTSQCA MDNDVEFPSE GGKE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 8e-39 | 53 | 142 | 6 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. Plays a role in the regulation of the embryogenesis. Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000269|PubMed:12509518, ECO:0000269|PubMed:17322342}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400023883 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC204082 | 1e-169 | AC204082.1 Solanum lycopersicum cv. Heinz 1706, chromosome 5 BAC clone C05SLe0086I08, complete sequence. | |||
GenBank | HG975517 | 1e-169 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006356441.2 | 1e-170 | PREDICTED: nuclear transcription factor Y subunit B-4-like | ||||
Refseq | XP_015168329.1 | 1e-170 | PREDICTED: nuclear transcription factor Y subunit B-4-like | ||||
Refseq | XP_015168330.1 | 1e-170 | PREDICTED: nuclear transcription factor Y subunit B-4-like | ||||
Refseq | XP_015168331.1 | 1e-170 | PREDICTED: nuclear transcription factor Y subunit B-4-like | ||||
Swissprot | Q84W66 | 3e-40 | NFYB6_ARATH; Nuclear transcription factor Y subunit B-6 | ||||
TrEMBL | M1B1V0 | 1e-168 | M1B1V0_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400035129 | 1e-169 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47670.2 | 3e-41 | nuclear factor Y, subunit B6 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400023883 |
Entrez Gene | 102591700 |