PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400023878 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NF-YB | ||||||||
Protein Properties | Length: 155aa MW: 16901.4 Da PI: 4.3887 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 30.6 | 8.3e-10 | 32 | 72 | 55 | 95 |
NF-YB 55 qrekrktingddllwalatlGfedyveplkvylkkyreleg 95 re+r+t + +d+ w + ++Gf+dy+epl +y+ + re +g PGSC0003DMP400023878 32 LREQRNTNTDEDVHWVINKFGFDDYIEPLPLYFPRCREDDG 72 59**********************************99665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.0E-5 | 27 | 73 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence Send to blast |
MDNGNHVGGS GNGGFHSYRK SPQLTPAHSL PLREQRNTNT DEDVHWVINK FGFDDYIEPL 60 PLYFPRCRED DGGECGSLIG ESLLKRPMVD TSSSCNITPY HLPPNFPMAH HHFVYPPPVG 120 NGDMQGDASN GSTSQCEVAS VDSDVEAPTE EDNE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400023878 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 1e-119 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015168348.1 | 1e-105 | PREDICTED: nuclear transcription factor Y subunit B-6-like | ||||
TrEMBL | M1B1U7 | 1e-111 | M1B1U7_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400035121 | 1e-112 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA111 | 24 | 356 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47670.2 | 4e-13 | nuclear factor Y, subunit B6 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400023878 |
Publications ? help Back to Top | |||
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