PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400023877 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NF-YB | ||||||||
Protein Properties | Length: 162aa MW: 18179.2 Da PI: 4.4994 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 96.3 | 2.6e-30 | 1 | 79 | 17 | 95 |
NF-YB 17 mkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 m+ + P + kis+dak t+ ec+sefi fvt ea+ +cqre+r+ti+ +d+ w + ++Gf+dy+epl +y+ +yre +g PGSC0003DMP400023877 1 MHSTHPPHVKISDDAKRTMYECISEFICFVTYEANAHCQREQRNTITDEDVHWVINKFGFDDYIEPLPLYFPRYREDDG 79 5667899********************************************************************9766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 4.3E-26 | 1 | 81 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.4E-13 | 1 | 55 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 5.37E-22 | 5 | 81 | IPR009072 | Histone-fold |
PRINTS | PR00615 | 8.5E-7 | 19 | 37 | No hit | No description |
PRINTS | PR00615 | 8.5E-7 | 38 | 56 | No hit | No description |
PRINTS | PR00615 | 8.5E-7 | 57 | 75 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MHSTHPPHVK ISDDAKRTMY ECISEFICFV TYEANAHCQR EQRNTITDED VHWVINKFGF 60 DDYIEPLPLY FPRYREDDGG KCGSLIGQSL LKRAMVDTAS SCNITPYHLP PNFPMARQNL 120 LYPPPMGNGD LQGDASNGST SQFVVTSVDS DVESPTEEDK E* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 6e-31 | 1 | 76 | 22 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400023877 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 1e-151 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015168349.1 | 1e-119 | PREDICTED: nuclear transcription factor Y subunit B-8-like | ||||
TrEMBL | M1B1U6 | 1e-119 | M1B1U6_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400035119 | 1e-119 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA14016 | 4 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47670.2 | 2e-32 | nuclear factor Y, subunit B6 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400023877 |
Publications ? help Back to Top | |||
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