PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400023827 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NF-YB | ||||||||
Protein Properties | Length: 124aa MW: 14325 Da PI: 6.2219 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 40.7 | 5.9e-13 | 2 | 44 | 53 | 95 |
NF-YB 53 kcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 +++r++r+ti+ +d+ w ++++ f+dy epl++yl++yre +g PGSC0003DMP400023827 2 RSKRKQRNTITIEDVHWVMSKFRFDDYTEPLTLYLHHYREDDG 44 6799***********************************9765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 9.0E-10 | 2 | 49 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 5.5E-8 | 3 | 46 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 124 aa Download sequence Send to blast |
MRSKRKQRNT ITIEDVHWVM SKFRFDDYTE PLTLYLHHYR EDDGGEHGSL REKYFLKRPM 60 VDADLGCNIM PYHLPPNFPM AHHHFVYPPP MENGNMHGDA SNGSTSQYAV DSDVEFPAEG 120 VKE* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 1 | 7 | RSKRKQR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400023827 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006356441.2 | 2e-58 | PREDICTED: nuclear transcription factor Y subunit B-4-like | ||||
Refseq | XP_015168329.1 | 2e-58 | PREDICTED: nuclear transcription factor Y subunit B-4-like | ||||
Refseq | XP_015168330.1 | 2e-58 | PREDICTED: nuclear transcription factor Y subunit B-4-like | ||||
Refseq | XP_015168331.1 | 2e-58 | PREDICTED: nuclear transcription factor Y subunit B-4-like | ||||
TrEMBL | M1B1Q0 | 3e-88 | M1B1Q0_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400035028 | 5e-89 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA111 | 24 | 356 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47670.2 | 3e-16 | nuclear factor Y, subunit B6 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400023827 |
Publications ? help Back to Top | |||
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