PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400023799 | ||||||||
Common Name | LOC107062261 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 158aa MW: 17968 Da PI: 9.1876 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.2 | 5e-19 | 31 | 82 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr + +g+++AeIrdp+ +g +r +lg+f+tae+Aa+a+++a+ +l+g+ PGSC0003DMP400023799 31 KYRGVRKRT-WGKFAAEIRDPTRQG--ARQWLGTFDTAEDAARAYDKAAFNLRGH 82 8*****887.**********96544..**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.9E-12 | 31 | 82 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.723 | 31 | 89 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.4E-31 | 31 | 91 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.9E-35 | 31 | 95 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-23 | 31 | 90 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.78E-29 | 31 | 90 | No hit | No description |
PRINTS | PR00367 | 2.8E-10 | 32 | 43 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-10 | 55 | 71 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence Send to blast |
MDSSSSSSSS KGKKIIQLEK ENGKDSNDLI KYRGVRKRTW GKFAAEIRDP TRQGARQWLG 60 TFDTAEDAAR AYDKAAFNLR GHLATLNFPN EYYSKLNDPH YYNYRTSLNV NVPSRSLERG 120 ISSIGHQDKE IIEFEYLDDS VLEELLGAED PKKMIRK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 7e-30 | 31 | 141 | 14 | 114 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400023799 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 0.0 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015168164.1 | 1e-113 | PREDICTED: ethylene-responsive transcription factor ERF098-like | ||||
Swissprot | Q9LTC5 | 3e-45 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | M1B1M3 | 1e-112 | M1B1M3_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400034984 | 1e-113 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23230.1 | 4e-38 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400023799 |
Entrez Gene | 107062261 |
Publications ? help Back to Top | |||
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