PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400023688 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NAC | ||||||||
Protein Properties | Length: 192aa MW: 21754.8 Da PI: 9.949 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 28.4 | 4.7e-09 | 9 | 133 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiyk..vePwdLp.kkvkaeek.ewyfFskrdkkyatgkrknratksgyWkatg 87 +G rF+P+d++++ + L++ v+g+ ++ +++++ ++ y ++P+ L +v + + +F+++ k + + ++ yWk PGSC0003DMP400023688 9 RGWRFDPSDNDIL-NILENYVTGRANPPQSTFNFANFYGdiTNPSALFaVAVGDPANpTIKYFVNTVKDKIS--VTS--SLGFYWKRDN 92 79**********9.88********977767777777775337*****7334433333355566665554332..222..23568***99 PP NAM 88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++++ +ge+ g kk++ ++ ++ ++ + W+m ey+l PGSC0003DMP400023688 93 QLIGIINEvTGENRGFKKSIKLF-QKGVDSDELVWIMTEYSL 133 9999888879999**********.56666689********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 14.321 | 7 | 155 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.88E-9 | 8 | 153 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-7 | 9 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MEINWIPTRG WRFDPSDNDI LNILENYVTG RANPPQSTFN FANFYGDITN PSALFAVAVG 60 DPANPTIKYF VNTVKDKISV TSSLGFYWKR DNQLIGIINE VTGENRGFKK SIKLFQKGVD 120 SDELVWIMTE YSLNSNTPGV EEDLKNEVIC RVRRILTSNP KARPNNSKKP KPSNNKRRNM 180 KLADIDLQLK L* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400023688 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | M1B1C2 | 1e-136 | M1B1C2_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400034827 | 1e-137 | (Solanum tuberosum) |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400023688 |
Publications ? help Back to Top | |||
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