PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400023644
Common NameLOC102590894
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 535aa    MW: 59605.4 Da    PI: 5.3809
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400023644genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS417.51.2e-1271655342374
                  GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                           +elL +cAeavs+ d + a+al+  l++++s +g+pm+Rl ay++e+++arl++s+s +yk+l+++e +    se l+++++ ++++P+
  PGSC0003DMP400023644 165 KELLDACAEAVSDADISTAEALMRALEQRVSVSGEPMERLGAYMLEGIRARLLSSGSIIYKKLKCKEPT---GSELLSYMQVIFNMCPY 250
                           78999***************************************************************9...9**************** PP

                  GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfe 177
                           +kf+ + aN  I ea+ +e+r+HiiDf+i qG QW+ Ll+ La Rp+gpp +RiTgv++ es   +   l+ +gerLa++A+++gvpfe
  PGSC0003DMP400023644 251 YKFACMSANVVIREAMMNENRIHIIDFQIAQGSQWIFLLHDLARRPGGPPFVRITGVDDDESAyaRGGGLQLVGERLAEVAKSCGVPFE 339
                           ***********************************************************998899999********************* PP

                  GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266
                           f+  +a +  +++le+Lrvk+gEalaVn+ ++lh+++desvs+ ++rd++L+lvkslsPk+v++veqe+++n+++Fl rf e+l+yy+a
  PGSC0003DMP400023644 340 FHG-AALSGCEVQLENLRVKHGEALAVNFPYMLHHMPDESVSTINHRDRLLRLVKSLSPKIVTLVEQESNTNTAPFLPRFRETLDYYTA 427
                           ***.8999********************************************************************************* PP

                  GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveees 355
                           +f+s++a  pr+++eri+ E+++++r++vn++acega+r+erhe ++kWr rl +aGF+p +ls ++ +++k +l++++ + yr  e++
  PGSC0003DMP400023644 428 MFESIDAARPRDDKERISAEEHCVARDVVNIIACEGADRVERHELFGKWRLRLVMAGFTPCQLSPSVGETIKDMLKEYNPN-YRYAESE 515
                           *******************************************************************************55.******* PP

                  GRAS 356 gslvlgWkdrpLvsvSaWr 374
                           g+l+lgWk+r+L + SaWr
  PGSC0003DMP400023644 516 GALYLGWKNRALATSSAWR 534
                           ******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.601138515IPR005202Transcription factor GRAS
PfamPF035144.0E-125165534IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MSGSVHGLYN QKMQQVEQYY TPYNVLKNSC KDTRSSGMQF SFQAQDEQFF TLDSSPATDY  60
VVNDSPPALS VSSNRSPFSP QCSQSYMSDL HHSSDNTCGS PLSGCSGIDD GDLRHVLREL  120
ENKLLGPESD TDDSCSCSLN DMVSKPASVT RWNRVLDMAP GLNLKELLDA CAEAVSDADI  180
STAEALMRAL EQRVSVSGEP MERLGAYMLE GIRARLLSSG SIIYKKLKCK EPTGSELLSY  240
MQVIFNMCPY YKFACMSANV VIREAMMNEN RIHIIDFQIA QGSQWIFLLH DLARRPGGPP  300
FVRITGVDDD ESAYARGGGL QLVGERLAEV AKSCGVPFEF HGAALSGCEV QLENLRVKHG  360
EALAVNFPYM LHHMPDESVS TINHRDRLLR LVKSLSPKIV TLVEQESNTN TAPFLPRFRE  420
TLDYYTAMFE SIDAARPRDD KERISAEEHC VARDVVNIIA CEGADRVERH ELFGKWRLRL  480
VMAGFTPCQL SPSVGETIKD MLKEYNPNYR YAESEGALYL GWKNRALATS SAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A8e-5917153325377Protein SCARECROW
5b3h_D8e-5917153325377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400023644
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2430270.0AC243027.1 Solanum tuberosum chromosome 11 clone RH073I03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006352339.10.0PREDICTED: scarecrow-like protein 13
SwissprotQ9M0M50.0SCL13_ARATH; Scarecrow-like protein 13
TrEMBLM1B1890.0M1B189_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000347630.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68124111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0SCARECROW-like 13
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]