PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400023570
Common NameLOC102582650
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family G2-like
Protein Properties Length: 451aa    MW: 50330.6 Da    PI: 7.5889
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400023570genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.84.4e-32255308255
               G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                           pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  PGSC0003DMP400023570 255 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 308
                           9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.69E-15252308IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-28253308IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-23255308IPR006447Myb domain, plants
PfamPF002498.3E-7256307IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009887Biological Processorgan morphogenesis
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010158Biological Processabaxial cell fate specification
GO:0010229Biological Processinflorescence development
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MPLEGVFIET PSSSTKQIPD LSLNISPPTN LDLSSRRCVT EVSENHERLL SEFSKTGNCL  60
TELSLAHPTN ITTTTTTVIN DDMTTRRGFL DHLPRNPYYI NHHHQHHHQS QNYSHMVQPM  120
NQINHGVSSL DVSDGLRPIK GIPVYNHNRS FPFLATNIDK EKDPKMCFYP SSSPSSSSPS  180
SPSPYFNNRF NGISSSSYHH VPHHHPLQYH HHLSQYGHLG GLGHNSHHEN IANSHSLMRS  240
RFLPKLPAKR SMRAPRMRWT STLHARFVHA VELLGGHERA TPKSVLELMD VKDLTLAHVK  300
SHLQMYRTVK TTDKPAVSSG QSDGSGEDDL TTIGSTGGGD RAGLGQFMDQ RGGSDGSLQP  360
EPDYPSTATN TLWSNSSSSR EGWLQANSND TNVLMRSHSF PSQQRSGHQI EECNSSRQKS  420
YNIGSNLDHQ KNPSLEFTLG RPDWIEKDHE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-16256310458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-16256310458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-16256310357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-16256310357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-16256310357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-16256310357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-16256310458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-16256310458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-16256310458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-16256310458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-16256310458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-16256310458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400023570
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006352401.10.0PREDICTED: transcription repressor KAN1-like isoform X1
TrEMBLM1B1360.0M1B136_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000346630.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24682355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16560.12e-59G2-like family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]