PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400023526 | ||||||||
Common Name | LOC102600271 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | Trihelix | ||||||||
Protein Properties | Length: 214aa MW: 24888.4 Da PI: 8.1969 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 78.7 | 8.5e-25 | 101 | 184 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k+ev+aL+ +r+ +++++ +g +k+ Weev++ + + g+ r++k+Ckekwen+nk+yk++ ++ k r +++ ++cpyf++l+ PGSC0003DMP400023526 101 RWPKSEVQALVSVRTCLDHKFLKG-AKGSVWEEVADGLGKMGYIRTAKKCKEKWENINKYYKRTIDSGKTR-PKNYRSCPYFHELD 184 8**********************9.99******************************************98.888899******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.097 | 94 | 157 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-4 | 99 | 156 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 1.1E-19 | 100 | 186 | No hit | No description |
CDD | cd12203 | 1.13E-18 | 100 | 163 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MVKKLMDRQE QMHKQLIEML EKKEEERIIR EEAWKQQEVE RARRDVELRA EETSRNLALI 60 AFLENLLGED FQIPKSSEVT SVVKDEGEVH GDIRSDPCNR RWPKSEVQAL VSVRTCLDHK 120 FLKGAKGSVW EEVADGLGKM GYIRTAKKCK EKWENINKYY KRTIDSGKTR PKNYRSCPYF 180 HELDSLYKKG LLNQGAGNCV KIETENKNVD PEE* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00552 | DAP | Transfer from AT5G47660 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400023526 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975523 | 0.0 | HG975523.1 Solanum lycopersicum chromosome ch11, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006352450.1 | 1e-156 | PREDICTED: trihelix transcription factor GT-2 | ||||
TrEMBL | M1B100 | 1e-155 | M1B100_SOLTU; Uncharacterized protein | ||||
TrEMBL | M1B101 | 1e-156 | M1B101_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400034607 | 1e-155 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47660.1 | 8e-41 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400023526 |
Entrez Gene | 102600271 |
Publications ? help Back to Top | |||
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