PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400023457
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HD-ZIP
Protein Properties Length: 682aa    MW: 77303.9 Da    PI: 6.7117
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400023457genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox38.81.6e-122391956
                          HHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox 19 FeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                          F+++++p++++r +L ++ gL+ +q+k+WFqN+R++ k
  PGSC0003DMP400023457  2 FKECPHPDENQRNQLGREAGLDPKQIKFWFQNKRTQTK 39
                          9**********************************988 PP
2START104.71.6e-332044224205
                           HHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS.............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT- CS
                 START   4 eeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv............dsgealrasgvvdmvlallveellddkeqWd 73 
                            + ++e + + + ++p Wv ss         e ++                        ++e ++++gvv m++ +l  ++ld   +W 
  PGSC0003DMP400023457 204 VASMNEMFELLQMNDPIWVDSSsdggcfiHRESYER---------IfpnlnrpyksatARIESSKDCGVVSMTAIELIHSFLDPV-KWM 282
                           6789999***************77754442222222.........22222346777889**************************.999 PP

                           TT-S....EEEEEEEECTT...EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEE CS
                 START  74 etla....kaetlevissg...galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgil 153
                           + ++    ka t+ev++sg   g +qlm+ +l  lsplv  Rdf f+Ry+rq    +w+ vdvS d  ++ ++  +++    ++pSg+ 
  PGSC0003DMP400023457 283 NLFPtivtKARTIEVLDSGtlgGSIQLMYEKLHILSPLVEaRDFFFIRYCRQIDPTTWIMVDVSYDLFNEIQSgVPPYSW--KFPSGCA 369
                           99999999*******************************99*********************999988887766666655..9****** PP

                           EEEECTCEEEEEEEE-EE--SS.XXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                 START 154 iepksnghskvtwvehvdlkgr.lphwllrslvksglaegaktwvatlqrqce 205
                           i++++ng s vtwvehv ++++ ++  ++r l+  ++  gak+w  tlqr  e
  PGSC0003DMP400023457 370 IQDMGNGQSMVTWVEHVQVDEKkQVNHIFRDLLCDRQTYGAKRWIVTLQRMSE 422
                           *******************975267************************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000868.80E-10142No hitNo description
SMARTSM003890.0038145IPR001356Homeobox domain
SuperFamilySSF466892.18E-11149IPR009057Homeodomain-like
PfamPF000464.5E-10139IPR001356Homeobox domain
PROSITE profilePS5007113.799141IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.8E-12248IPR009057Homeodomain-like
PROSITE profilePS5084833.204192426IPR002913START domain
SuperFamilySSF559613.3E-26195423No hitNo description
CDDcd088758.42E-81199422No hitNo description
SMARTSM002342.6E-17201423IPR002913START domain
Gene3DG3DSA:3.30.530.203.8E-7203386IPR023393START-like domain
PfamPF018522.4E-27204422IPR002913START domain
SuperFamilySSF559611.01E-10445647No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    Send to blast
FFKECPHPDE NQRNQLGREA GLDPKQIKFW FQNKRTQTKT QNERSDNNAL RTENERFLCE  60
NMAMKESMKN IMCPKCDGPP IGKEERARNL ENMKMENQRL REQHEKISNF LSNVLGRSFV  120
MGSNLAPPKS TLQTSSNSSD ESLLSQICSS PIGYPPQENN HNNNNGRAHS ININNIPIMS  180
PSRQEHYEFH HDNRQKTDMF EIVVASMNEM FELLQMNDPI WVDSSSDGGC FIHRESYERI  240
FPNLNRPYKS ATARIESSKD CGVVSMTAIE LIHSFLDPVK WMNLFPTIVT KARTIEVLDS  300
GTLGGSIQLM YEKLHILSPL VEARDFFFIR YCRQIDPTTW IMVDVSYDLF NEIQSGVPPY  360
SWKFPSGCAI QDMGNGQSMV TWVEHVQVDE KKQVNHIFRD LLCDRQTYGA KRWIVTLQRM  420
SERHNFAMGA TCPTRNDFKG VFNDPEGLKN TIQISQRMVK SFFEILNMTD KLDFPTSSQL  480
NSGDRISIRK NEEITQTKGF IATAATSLWI PLSFQDVFNF FKDDKTRSQW DILTGGLKVM  540
ELARVPTGTF PGNCITIIQS YMQKEKLVLQ ESSIDEMGAF LIFAPIELPT ITSIVNGHDA  600
TKVPILPSGI IISPDGRLVS NRGNTGNAQN GSILTVTFQI LICDNINSSI SQQQHMEAVT  660
SIHSLLSTTI LKIKAALGCS D*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400023457
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015057403.10.0homeobox-leucine zipper protein ROC8-like
TrEMBLM1B0T30.0M1B0T3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000345030.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10211732
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.11e-161homeodomain GLABROUS 11
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]