PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400023030
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HD-ZIP
Protein Properties Length: 353aa    MW: 39986.1 Da    PI: 4.7079
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400023030genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox19.41.8e-06113142635
                           S--HHHHHHHHHHHHHSSS--HHHHHHHHH CS
              Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAk 35 
                           ++tk+ +ee+e+lF+++++p++++++eL+ 
  PGSC0003DMP400023030 113 RHTKQHIEEMEALFKECPKPDEKKMKELSG 142
                           689*************************96 PP
2START127.81.3e-4014933817206
                           C-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.EEEEEEEECTT......EEEEEEEEXX CS
                 START  17 eepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetla.kaetlevissg......galqlmvael 98 
                           eep+W+   ++ ++    ++f+++++ ++ a+r+s++v+m++ +lve+++d++  W + +   + t++v+s+g      g    ++ae+
  PGSC0003DMP400023030 149 EEPLWFPNIDGVKNVFNEKEFPRGNGIKTTASRESAFVIMNHINLVEIFMDTN-HWANLFSsIVLTMDVLSPGvtenlnGSMKMIYAEF 236
                           5666666666666666668899999999*************************.*******667899********************** PP

                           TTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHH CS
                 START  99 qalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvk 186
                           q++sp  p Rd +fvR++++  +g w+ivdvS d++   p    + ++++ pSg++i++ sn  skvtw+eh+  ++ l+h +++ +v+
  PGSC0003DMP400023030 237 QVPSPQIPnRDCYFVRSCKKIDDGLWAIVDVSPDHT---P----ITKCRKSPSGCMIQQISNDISKVTWIEHIVANDTLIHTIYKAFVN 318
                           ******************************775543...4....579****************************************** PP

                           HHHHHHHHHHHHHTXXXXXX CS
                 START 187 sglaegaktwvatlqrqcek 206
                           s la+g k+w atl+rqce+
  PGSC0003DMP400023030 319 SNLAFGEKRWIATLHRQCER 338
                           ******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.8E-694142IPR009057Homeodomain-like
CDDcd000860.00343108156No hitNo description
SMARTSM002342.5E-22123338IPR002913START domain
CDDcd088753.79E-77137337No hitNo description
PROSITE profilePS5084825.314149341IPR002913START domain
PfamPF018524.4E-33152338IPR002913START domain
SuperFamilySSF559613.16E-26174338No hitNo description
Gene3DG3DSA:3.30.530.204.1E-6220302IPR023393START-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MARSGCAVAY VVVTVENSLV IGNDYEFVPS LVTGDDREII LSSSGLQLGQ SSNMLESQVT  60
PLDIESMTIS EDEIMQLLTD DEANSKSDYN DYKFDEQDDN VDEHPNKKIC NHRHTKQHIE  120
EMEALFKECP KPDEKKMKEL SGKEFRQMEE PLWFPNIDGV KNVFNEKEFP RGNGIKTTAS  180
RESAFVIMNH INLVEIFMDT NHWANLFSSI VLTMDVLSPG VTENLNGSMK MIYAEFQVPS  240
PQIPNRDCYF VRSCKKIDDG LWAIVDVSPD HTPITKCRKS PSGCMIQQIS NDISKVTWIE  300
HIVANDTLIH TIYKAFVNSN LAFGEKRWIA TLHRQCERLA SVEATNSHQN DI*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in cell specification and pattern formation during embryogenesis. Binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to PDF2. {ECO:0000269|PubMed:11439135, ECO:0000269|PubMed:12505995}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400023030
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754464e-61HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006342404.11e-100PREDICTED: homeobox-leucine zipper protein ROC7-like
SwissprotQ8RWU44e-70ATML1_ARATH; Homeobox-leucine zipper protein MERISTEM L1
TrEMBLM1AZS00.0M1AZS0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000338300.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.22e-72HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  3. Takada S,Takada N,Yoshida A
    Induction of epidermal cell fate in Arabidopsis shoots.
    Plant Signal Behav, 2013. 8(11): p. e26236
    [PMID:23989220]
  4. Liang Z,Brown RC,Fletcher JC,Opsahl-Sorteberg HG
    Calpain-Mediated Positional Information Directs Cell Wall Orientation to Sustain Plant Stem Cell Activity, Growth and Development.
    Plant Cell Physiol., 2015. 56(9): p. 1855-66
    [PMID:26220906]
  5. Katagiri Y, et al.
    The coordination of ploidy and cell size differs between cell layers in leaves.
    Development, 2016. 143(7): p. 1120-5
    [PMID:26903507]
  6. Seeliger I, et al.
    The AP2-type transcription factors DORNRÖSCHEN and DORNRÖSCHEN-LIKE promote G1/S transition.
    Mol. Genet. Genomics, 2016. 291(5): p. 1835-49
    [PMID:27277595]
  7. Schwarz EM,Roeder AH
    Transcriptomic Effects of the Cell Cycle Regulator LGO in Arabidopsis Sepals.
    Front Plant Sci, 2016. 7: p. 1744
    [PMID:27920789]
  8. Meyer HM, et al.
    Fluctuations of the transcription factor ATML1 generate the pattern of giant cells in the Arabidopsis sepal.
    Elife, 2018.
    [PMID:28145865]