PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400022848
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 322aa    MW: 35634.7 Da    PI: 4.2972
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400022848genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.27.9e-052703091054
                           HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           r+R d+i++ ++ L+e++P      ++K s + +  +A++Y++sL
  PGSC0003DMP400022848 270 RQRQDKIRETISILQEIIPGG----KGKDS-MVVIDEAIHYLRSL 309
                           9******************97....68888.67779999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.055260309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.15E-6270316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.00E-4270310No hitNo description
Gene3DG3DSA:4.10.280.103.1E-6270316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MTPQSNEVPM NGNSPFYTFP GLPESNASWP TETCNWLYYS PQFYQGFNPV STTLPKEKFA  60
PGALENLEGN KHPNGGTTSA QKRFLVFDQS GDQTTLIYNS ANGTHVQFPA SLNPKAPDLY  120
KEDPDIKRNE TSPFGHFFGD EYYEENNRDD VESEMHEDTE ELNALLYSDD DNDYSEDDEE  180
TSTGHSPSTM TTHDLREWFD GRGEEVASSA GPTKRHKLLD GSFNAPELRD TATSAKAYTC  240
SDLEDDAQSS CGNGLEQDSG APDSPSGKKR QRQDKIRETI SILQEIIPGG KGKDSMVVID  300
EAIHYLRSLK MKAKSLGLDS L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400022848
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006338090.10.0PREDICTED: transcription factor bHLH143-like
TrEMBLM1AZD50.0M1AZD5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000335890.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA494255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.15e-08bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]