PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400022834
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 591aa    MW: 64760.1 Da    PI: 6.1471
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400022834genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.94.2e-14395441455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  PGSC0003DMP400022834 395 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 441
                           7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.7E-327130IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.371391440IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-18395452IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.26E-16395445No hitNo description
Gene3DG3DSA:4.10.280.107.0E-19395454IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-11395440IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-18397446IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
MEVTAEEASL HRSQQLRELY DSLSAGDSNP PARRPSAALS PEDLTESEWF YLMCVSFSFP  60
PPIGLPGKAY SKKHHIWIMG ANEVDSKVFC RAILAKTVVC IPLLDGVVEL GTTERVQEDI  120
GFIHHVKSFF NEQQQAQPPK PALSEHSTSD PAAFSEPHFY SSNTPSSAVE LDSNGIAIQS  180
VAGAANPIAA EASELMPLDM SETIRLGSPD DGSNNMDTDL YLDGISQAGN TADSFKAETA  240
ISWANFQDLQ HLTGVPSYDE LSQEDAHYSQ TVSAVLEHLS NTSSKFASST TIMGSISPDS  300
AQSAFTLWPI ICSPNPSHCH RQHGGDGSGT SSQWLLKSIL FTVPFLHTTK KLHQLPEALS  360
PKSRDSAADS SAAASRFRKG CTINSSTQQE ETNGNHVLAE RRRREKLNER FIILRSLVPF  420
VTKMDKASIL GDTIEYVKQL RKKVQDLEAR DRHAETTKNA DEKNGTTIVK AFPGKGKRKM  480
KSTVEGSIGR APAKITVSPP MDEEVLQVEV SIIENDALVE LRCPYKEGLL LDVMQMLREL  540
KVEVVAIQSS LNTGFLFAEL RAKVKEDIYG RKASILEVKK SIHQIIPRAN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A3e-13413169193Transcription factor MYC3
4rqw_B3e-13413169193Transcription factor MYC3
4rs9_A3e-13413169193Transcription factor MYC3
4yz6_A3e-13413169193Transcription factor MYC3
5gnj_A4e-14395449862Transcription factor MYC2
5gnj_B4e-14395449862Transcription factor MYC2
5gnj_E4e-14395449862Transcription factor MYC2
5gnj_F4e-14395449862Transcription factor MYC2
5gnj_G4e-14395449862Transcription factor MYC2
5gnj_I4e-14395449862Transcription factor MYC2
5gnj_M4e-14395449862Transcription factor MYC2
5gnj_N4e-14395449862Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1399404ERRRRE
2400405RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400022834
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX8486600.0JX848660.1 Solanum tuberosum basic helix loop helix (bHLH1) mRNA, complete cds.
GenBankKP3171730.0KP317173.1 Solanum tuberosum cultivar Hei Meiren bHLH1 (HLH1-1) mRNA, HLH1-1-purple allele, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001275098.10.0transcription factor TT8-like
SwissprotE3SXU40.0BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLM1AZC20.0M1AZC2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000335690.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA90282022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.11e-120bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]