PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400022715 | ||||||||
Common Name | LOC102596847 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 231aa MW: 23876 Da PI: 9.0743 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.3 | 5e-20 | 29 | 78 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +gr++AeIrdp gk+ r++lg+f+taeeAa+a+++a+++++g PGSC0003DMP400022715 29 HYRGVRKRP-WGRYAAEIRDP---GKKCRVWLGTFDTAEEAARAYDKAAREFRG 78 6********.**********8...557************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.4E-31 | 29 | 86 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.3E-14 | 29 | 78 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.49E-22 | 29 | 87 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.4E-38 | 29 | 92 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.485 | 29 | 86 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.46E-33 | 29 | 88 | No hit | No description |
PRINTS | PR00367 | 3.2E-11 | 30 | 41 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-11 | 52 | 68 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MAPKQKCTTA ATAVTVTTAV TAAAVKEVHY RGVRKRPWGR YAAEIRDPGK KCRVWLGTFD 60 TAEEAARAYD KAAREFRGVK AKTNFQIVMQ PEDVNRSPSQ TSTVESSSAA VAVAAAAVTV 120 TATAAAMVES VPLDLSLGSS SSVGIFSNGV GKFLFQNSPT GGITPPMYYL QGAGVIRNGG 180 GSGDGGAAAG GQSGMMKSES DSSTVIDFMG NDLKPKANFD LNLLPAPEDM * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 6e-21 | 29 | 87 | 2 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 6e-21 | 29 | 87 | 5 | 64 | ATERF1 |
3gcc_A | 6e-21 | 29 | 87 | 5 | 64 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400022715 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006343223.1 | 1e-169 | PREDICTED: ethylene-responsive transcription factor 8-like | ||||
TrEMBL | M1AZ27 | 1e-167 | M1AZ27_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400033391 | 1e-168 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15210.1 | 9e-26 | ethylene responsive element binding factor 4 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400022715 |
Entrez Gene | 102596847 |
Publications ? help Back to Top | |||
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