PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400022708 | ||||||||
Common Name | LOC102598246 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | Dof | ||||||||
Protein Properties | Length: 259aa MW: 29354.6 Da PI: 8.2054 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 118.8 | 2e-37 | 32 | 91 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++++lkcprCds+ntkfCyynnyslsqPr+fCk+C+ryWt+GG+lr vP+Gg++rknk+ PGSC0003DMP400022708 32 QQQTLKCPRCDSSNTKFCYYNNYSLSQPRHFCKSCKRYWTRGGTLRHVPLGGSSRKNKNI 91 7899*****************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 2.8E-33 | 34 | 90 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.286 | 36 | 90 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 3.0E-24 | 36 | 89 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 38 | 74 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MLGESDEKNM KSNFMIMEKQ NIQDQPQQQP QQQQTLKCPR CDSSNTKFCY YNNYSLSQPR 60 HFCKSCKRYW TRGGTLRHVP LGGSSRKNKN IQKPNFVTSS TNLGPNFHEP QVVVDHTNPL 120 FNYGLSTNPF DPNIQFPRLF NFSRVFNNEN LGLGFSNEFK KIQDIVTSTN NSSSSLLSSY 180 PTFGSSLISS SSSNLTSLIA PTLHQQNFIT NNDKFQDSNY HELNQIEEMN YVNNPFLSWA 240 SDYVDPSNLG SSSLPSLI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400022708 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX022891 | 5e-38 | JX022891.1 UNVERIFIED: Solanum lycopersicoides voucher UCD:TGRC LA2408 putative Dof zinc finger protein-like (Dof01) gene, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015162392.1 | 0.0 | PREDICTED: dof zinc finger protein DOF1.4-like | ||||
TrEMBL | M1AZ23 | 0.0 | M1AZ23_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400033382 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA88 | 24 | 419 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28310.1 | 2e-34 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400022708 |
Entrez Gene | 102598246 |
Publications ? help Back to Top | |||
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