PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400022163 | ||||||||
Common Name | LOC102586420 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 202aa MW: 22053.5 Da PI: 4.4899 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.8 | 4.2e-16 | 18 | 66 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r ++ +g+Wv+eIr+p++ ++r++lg++ t+++Aa+a++ a+++l+g PGSC0003DMP400022163 18 IYRGIR-CR-SGKWVCEIREPRK---TTRIWLGTYPTPQMAAAAYDVAALALKG 66 69***9.55.6*********843...5************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.4E-10 | 17 | 66 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.83E-13 | 17 | 77 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.4E-24 | 18 | 76 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.55E-16 | 18 | 76 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.177 | 18 | 75 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.2E-24 | 18 | 81 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MTDPSHATKS RTNTKHPIYR GIRCRSGKWV CEIREPRKTT RIWLGTYPTP QMAAAAYDVA 60 ALALKGTQNV VLNFPHLVDS YPKLPPSPSP ADIQRAAATA AGAMASLGDD DDRSLESRDG 120 AICNERGSTE FPSSSGNYDM QIGTQTTAGE EEYVDEEALF EFPSLLVNMA EAMMLSPPRI 180 NSFQSEDYSS GDFDAESLWS Y* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400022163 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 1e-179 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006358390.1 | 1e-150 | PREDICTED: ethylene-responsive transcription factor ERF027-like | ||||
TrEMBL | M1AXQ2 | 1e-148 | M1AXQ2_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400032624 | 1e-149 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA553 | 22 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52020.1 | 6e-33 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400022163 |
Entrez Gene | 102586420 |
Publications ? help Back to Top | |||
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