PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400022162
Common NameLOC102586090
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 250aa    MW: 28294.2 Da    PI: 4.7554
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400022162genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.24.1e-1850100256
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 
                            y+GVr++  +++Wv+e+r+p        kr++lg++ t+e+Aa+a++ a+++l+g+
  PGSC0003DMP400022162  50 IYRGVRRRD-NNKWVCEVREP-----IeqKRIWLGTYPTPEMAARAHDVAALALRGN 100
                           69****998.8*********8.....336*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.4E-134999IPR001471AP2/ERF domain
CDDcd000181.52E-2849109No hitNo description
SuperFamilySSF541716.54E-2150109IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.7E-2850109IPR001471AP2/ERF domain
SMARTSM003804.5E-2750113IPR001471AP2/ERF domain
PROSITE profilePS5103221.69450107IPR001471AP2/ERF domain
PRINTSPR003673.9E-75162IPR001471AP2/ERF domain
PRINTSPR003673.9E-77389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MNDNNFRDHY LHETSTSSGG VQDEGIFLLA SSQPKKRAGR KKFKETRHPI YRGVRRRDNN  60
KWVCEVREPI EQKRIWLGTY PTPEMAARAH DVAALALRGN LATLNFADSS WRLAVPVSKD  120
PEELRQAAMK AAEAFLQDTE SVEINYMNHE EINYSEGVKC QENIVVGGAS GSDNNNLVGN  180
EVNNIQNMEM DSILCYNNNW GGNNEIEGSS WQEKMSEGHL FSPTPHLDSY FSWDDVESDV  240
EVSLWSYNM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400022162
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754471e-118HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006358389.10.0PREDICTED: dehydration-responsive element-binding protein 1F-like
TrEMBLM1AXQ10.0M1AXQ1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000326230.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26324183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63030.22e-44ERF family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]