PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400022161 | ||||||||
Common Name | LOC102585755 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 239aa MW: 26830.9 Da PI: 4.8133 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.7 | 7e-19 | 50 | 101 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 + y+GVr++ +++Wv+e+r+ps+ +kr++lg++ t+e+Aa+a++ a+++l+g+ PGSC0003DMP400022161 50 PVYRGVRRRN-NNKWVCELREPSQ---QKRIWLGTYPTPEMAARAHDVAALALRGN 101 68*****887.8*********954...5*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.9E-14 | 50 | 100 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.05E-21 | 51 | 110 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-28 | 51 | 110 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.562 | 51 | 108 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.3E-27 | 51 | 114 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.14E-29 | 52 | 110 | No hit | No description |
PRINTS | PR00367 | 2.9E-7 | 52 | 63 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-7 | 74 | 90 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MNNNSSLYSS DLNPLSATTP SDEEGLILLL ASSRPKKRAG RKKFKETRHP VYRGVRRRNN 60 NKWVCELREP SQQKRIWLGT YPTPEMAARA HDVAALALRG NLATLNFADS RWRLPVPASK 120 DPKDIRQAAV IAAQAFSQDT EVDYMNEEVN SNTTDEIDIA RVNNGSSSDF SAKELSMDME 180 NILSCNGGED NYMLETEGWR EKMAEELLFS PTPRLGSCFS WDDVETSDVE VSLWSYSI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400022161 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 0.0 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006358388.1 | 1e-177 | PREDICTED: dehydration-responsive element-binding protein 1E-like | ||||
TrEMBL | M1AXQ0 | 1e-176 | M1AXQ0_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400032622 | 1e-176 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA263 | 24 | 183 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12610.1 | 4e-45 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400022161 |
Entrez Gene | 102585755 |
Publications ? help Back to Top | |||
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