PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400022115 | ||||||||
Common Name | LOC102597132 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 281aa MW: 32012.3 Da PI: 7.9281 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.3 | 3.1e-19 | 115 | 169 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk+q +Lee F+++++++ ++++ LAk+lgL rqV vWFqNrRa+ k PGSC0003DMP400022115 115 RKKLRLTKDQSVVLEESFKEHNTLNPKQKQALAKRLGLRPRQVEVWFQNRRARTK 169 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 127.3 | 6.6e-41 | 115 | 204 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rl+k+q+ +LEesF+e+++L+p++K++la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e Lkr++++l+een+rL+kev+eLr PGSC0003DMP400022115 115 RKKLRLTKDQSVVLEESFKEHNTLNPKQKQALAKRLGLRPRQVEVWFQNRRARTKLKQTEVDCELLKRCCENLTEENRRLQKEVQELR- 202 69*************************************************************************************9. PP HD-ZIP_I/II 90 el 91 +l PGSC0003DMP400022115 203 AL 204 55 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04618 | 3.1E-16 | 1 | 87 | IPR006712 | HD-ZIP protein, N-terminal |
Gene3D | G3DSA:1.10.10.60 | 3.1E-18 | 100 | 169 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.42E-18 | 107 | 172 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.54 | 111 | 171 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.5E-16 | 113 | 175 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.2E-16 | 115 | 169 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.29E-15 | 115 | 172 | No hit | No description |
PRINTS | PR00031 | 1.3E-5 | 142 | 151 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 146 | 169 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.3E-5 | 151 | 167 | IPR000047 | Helix-turn-helix motif |
SMART | SM00340 | 1.2E-26 | 171 | 214 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 4.9E-11 | 171 | 205 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MLENQDLRLS LSLSFSENKT TNPLQLNSWI GSFPSSDRNL EKCRTFLKGI DVNIIPTITE 60 EEEEEVGVYS PNSSISTLSG NKRNEREIIN CCEELEIERE CSRSISDEED GETSRKKLRL 120 TKDQSVVLEE SFKEHNTLNP KQKQALAKRL GLRPRQVEVW FQNRRARTKL KQTEVDCELL 180 KRCCENLTEE NRRLQKEVQE LRALKLSPQF YMQMTPPTTL TMCPSCERVA GPSTPSTSGA 240 ASVDARANQM VLARQRPVPF NLWTASPVPH RPINALHPRS * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 113 | 119 | SRKKLRL |
2 | 163 | 171 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the negative regulation of cell elongation and specific cell proliferation processes such as lateral root formation and secondary growth of the vascular system. Acts as mediator of the red/far-red light effects on leaf cell expansion in the shading response. Binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. Negatively regulates its own expression. {ECO:0000269|PubMed:10477292, ECO:0000269|PubMed:11260495, ECO:0000269|PubMed:8449400}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400022115 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Rapidly and strongly induced by lowering the ratio of red to far-red light. {ECO:0000269|PubMed:8106086}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 1e-145 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006358337.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HAT4 | ||||
Swissprot | Q05466 | 1e-92 | HAT4_ARATH; Homeobox-leucine zipper protein HAT4 | ||||
TrEMBL | M1AXL4 | 0.0 | M1AXL4_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400032546 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1118 | 24 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16780.1 | 3e-83 | homeobox protein 2 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400022115 |
Entrez Gene | 102597132 |