PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400021917 | ||||||||
Common Name | LOC102601150 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | TCP | ||||||||
Protein Properties | Length: 401aa MW: 43555.9 Da PI: 6.6613 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 114.5 | 1.4e-35 | 28 | 149 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........ssssasec..eaess 78 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++akpai+el+++ s+ +a+++ e+e+ PGSC0003DMP400021917 28 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKPAIDELAELpawkptigsvSAAAATNTniEQEQA 116 79**************************************************************7777766644222222222222222 PP TCP 79 sssasnsssg........................k 89 +++++ ++ + PGSC0003DMP400021917 117 QKQQE--DNNfafqqgnvslfdnvagpsskrameS 149 22222..1113344444555443333333333330 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 6.8E-32 | 28 | 205 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 34.543 | 30 | 88 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 401 aa Download sequence Send to blast |
MGETSRLGIR NTVGEIVEVQ GGHIVRSTGR KDRHSKVCTA KGPRDRRVRL SAHTAIQFYD 60 VQDRLGYDRP SKAVDWLIKK AKPAIDELAE LPAWKPTIGS VSAAAATNTN IEQEQAQKQQ 120 EDNNFAFQQG NVSLFDNVAG PSSKRAMESN TASFLPPSLE SDAIADTIKS FFPMGSSTSG 180 NSSAMQFHSF QEPHMLSRTN SQNQDLSLSL QFQDPILLHH QNQQAQHHNQ TNHREQEQVQ 240 VQAPAHFTGN TPLGFDTSGW SMHQRLGSWS DSRDTGPGGS GGAVTGPGGY LFNSPPAPAL 300 LQQLFGQNQF FSQRGPLQSS NTSSVRAWMD PSTIAIASGD PSHHHQAVLP MYPSTIPGYG 360 FASEVGEFSG FRIPARIQGE EEEHDGISDK PSSASSDSRH * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-20 | 35 | 88 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 2e-20 | 35 | 88 | 1 | 54 | Putative transcription factor PCF6 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18816164, ECO:0000269|PubMed:25378179}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00009 | PBM | Transfer from 929286 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400021917 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:18816164}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM210877 | 0.0 | HM210877.1 Solanum tuberosum lanceolate gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006348284.1 | 0.0 | PREDICTED: transcription factor TCP4-like | ||||
Swissprot | Q8LPR5 | 1e-102 | TCP4_ARATH; Transcription factor TCP4 | ||||
TrEMBL | M1AX46 | 0.0 | M1AX46_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400032269 | 0.0 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 6e-92 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400021917 |
Entrez Gene | 102601150 |