PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400021774
Common NameLOC102599019
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 339aa    MW: 37458.5 Da    PI: 5.0311
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400021774genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.3e-19136186155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           ++++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ +l+g
  PGSC0003DMP400021774 136 KKFRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTYDTAEEAAMVYDHAAIQLRG 186
                           59********.**********72....45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.54E-31136194No hitNo description
SMARTSM003803.5E-37137200IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.6E-30137194IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-21137194IPR016177DNA-binding domain
PfamPF008474.5E-12137186IPR001471AP2/ERF domain
PROSITE profilePS5103223.63137194IPR001471AP2/ERF domain
PRINTSPR003673.6E-10138149IPR001471AP2/ERF domain
PRINTSPR003673.6E-10160176IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048364Biological Processroot development
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MDQQTMLSSG VKYTEHRKQI TMVRASAPVS FTGRRRGSEM NAAGPRVVRI TVTDADATDS  60
SSDEGEQRFY GRQRVRKFVN EVRIEQSSNC NGSVNGVLRN GSSSETAPVV AAPPKRRKKN  120
AGATTAASKL KVNNVKKFRG VRQRPWGKWA AEIRDPLRRV RLWLGTYDTA EEAAMVYDHA  180
AIQLRGPDAL TNFATPPATK TSCSGYNSGE ESHNDQRSPK SVLRCASTSF DESQNNEEAE  240
AESLPILPSD IRDKNDISMS ENFCDFPPFE SFFPDDLFQF ENPVTISDLF EPITLPDCNN  300
MLFGSSTTDF GFGSSSWPEE DFFQDFGDVF GSDPLVAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-19136193159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A4e-19136193462ATERF1
3gcc_A4e-19136193462ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00027PBMTransfer from AT4G23750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400021774
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006343893.10.0PREDICTED: ethylene-responsive transcription factor CRF2
TrEMBLM1AWS30.0M1AWS3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000320580.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.18e-44cytokinin response factor 4
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]