PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400021708 | ||||||||
Common Name | LOC102605272 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ARF | ||||||||
Protein Properties | Length: 656aa MW: 73486.2 Da PI: 6.8552 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.4 | 2.7e-23 | 128 | 228 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 f+kvlt sd++++g +++ +k+a+e+ +++++ ++l+ +d++ +W +k+i+r++++r++lt+GW++Fv++++L +gD++vF PGSC0003DMP400021708 128 FCKVLTASDTSTHGGFSVLRKHANEClppldmnQQIPT--QELIAKDLHDMEWHFKHIFRGQPRRHLLTTGWSNFVSSKRLVAGDSFVF 214 99****************************97544444..48*********************************************** PP EE-SSSEE..EEEEE- CS B3 83 kldgrsefelvvkvfr 98 + +++el+v+v+r PGSC0003DMP400021708 215 L--RGDNGELRVGVRR 228 *..3489999****98 PP | |||||||
2 | Auxin_resp | 98 | 1.3e-32 | 254 | 333 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t++ F v+Y+Pr+ ++F+v+++k+++a+++ +svGmRfkm+fe e+ + rr++Gt+vgv dl++ +W++S WrsLk PGSC0003DMP400021708 254 ASHAVTTQTLFVVYYKPRT--TQFIVSLNKYLEAVNHGYSVGMRFKMQFEAEENPDRRFMGTIVGVDDLSS-QWKDSAWRSLK 333 689***************6..9**********************************************777.*********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.4E-41 | 116 | 257 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.2E-41 | 121 | 243 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.13E-21 | 126 | 228 | No hit | No description |
Pfam | PF02362 | 5.2E-21 | 128 | 228 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.8E-22 | 128 | 230 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.702 | 128 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.0E-30 | 254 | 333 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 3.0E-10 | 552 | 647 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 7.46E-11 | 557 | 637 | No hit | No description |
PROSITE profile | PS51745 | 20.053 | 561 | 642 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 656 aa Download sequence Send to blast |
MASKNGCYQS QQKKNSSGKD DLYHELWQLC AGPIVDVPKE GESVYYFPQG HMEQLVASIN 60 QEMDQRVPSF NLKSKILCRV INSHFLAEED NDEVYVQITL MPEAPDKAEP TNPDPFLPEP 120 VKPKVHSFCK VLTASDTSTH GGFSVLRKHA NECLPPLDMN QQIPTQELIA KDLHDMEWHF 180 KHIFRGQPRR HLLTTGWSNF VSSKRLVAGD SFVFLRGDNG ELRVGVRRLV RQQSSMPSSV 240 ISSQSMHLGV LATASHAVTT QTLFVVYYKP RTTQFIVSLN KYLEAVNHGY SVGMRFKMQF 300 EAEENPDRRF MGTIVGVDDL SSQWKDSAWR SLKVRWDEPA AIARPDRVSP WEIEPYVSSI 360 PNALVPPTAG KNKRHRLHSE IKISEPASSI ASAVWNPSLD SPQFNTSGIN SSTNCTLTSR 420 TESGWPLPHL NTAGMLVDET EDSRSASTWC GFPCVLAPQF GQGTNQPIVI PTDERKCNTK 480 TTCRLFGIDL KKTSISTTEA LLPPQPADIS RVSAERAPPN MAPAGDSDQK SDLSVDFKDQ 540 MQGHLRLPLK EVQSKQSCST RSRTKVQMQG VAVGRAVDLT ILKGYNELTK ELEEMFEIQG 600 ELQSRQKWGI LFTDDEGDTM LMDDYPWQDF CNVARKIFIC SSQDMKKLTL SRADS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-173 | 15 | 355 | 6 | 354 | Auxin response factor 1 |
4ldw_A | 1e-173 | 15 | 355 | 6 | 354 | Auxin response factor 1 |
4ldw_B | 1e-173 | 15 | 355 | 6 | 354 | Auxin response factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400021708 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT013639 | 0.0 | BT013639.1 Lycopersicon esculentum clone 132441R, mRNA sequence. | |||
GenBank | HM037250 | 0.0 | HM037250.1 Solanum lycopersicum cultivar Zhongshu No. 6 auxin response factor 9 (ARF9) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006343828.1 | 0.0 | PREDICTED: auxin response factor 9 | ||||
Swissprot | Q9XED8 | 0.0 | ARFI_ARATH; Auxin response factor 9 | ||||
TrEMBL | M1AWK9 | 0.0 | M1AWK9_SOLTU; Auxin response factor | ||||
STRING | PGSC0003DMT400031965 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2347 | 24 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23980.1 | 0.0 | auxin response factor 9 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400021708 |
Entrez Gene | 102605272 |
Publications ? help Back to Top | |||
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