PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400021688
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Nin-like
Protein Properties Length: 704aa    MW: 81153.2 Da    PI: 6.435
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400021688genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK543.3e-17530577350
                RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkik 50 
                           ++++ +dl+++F++++ dAA +L+++ ++LKr CR+yGI+RWP  k k
  PGSC0003DMP400021688 530 DSVNYDDLKQHFDKNLSDAAESLQISRSTLKRLCRKYGIRRWPLSKRK 577
                           678899*************************************86655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151914.516516601IPR003035RWP-RK domain
PfamPF020424.9E-17532578IPR003035RWP-RK domain
Gene3DG3DSA:1.10.10.607.3E-6543602IPR009057Homeodomain-like
SuperFamilySSF542777.29E-18609694No hitNo description
Gene3DG3DSA:3.10.20.2402.9E-17611694No hitNo description
PROSITE profilePS5174519.025613695IPR000270PB1 domain
SMARTSM006666.4E-12613695IPR000270PB1 domain
PfamPF005641.9E-13614693IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 704 aa     Download sequence    Send to blast
MINNIPFDHS ANMMEQIGKN QYPMINDDVY EVYTSSEFMN YIGEPLSCSE ERSNFHLMVF  60
WTNNQPQSTS VKEKIKLALQ RIETSQVILL QFWGLENIEG RNYLSTSGQP FGLRYLYKGL  120
CWYRKHCQGY KYSVDKGENP EQGREKTHLF GPPTRVFQQK LPESSTHVGY YTNEEFPMRD  180
HVLQCGVRTY LALPVFEPIE KNCIGVIELV TVWKGGYLTC EVERVLNPLE AVDLKCPKIF  240
LNKDRKVQAG KHNEGEEFKR MLKIVRETHK LPFIRVWIPC VNLEMDHNGM YIGCTELAMS  300
ASNEVYFVAD EEMDANDHVY DDYYYDDMLC FRDISKLQPL QKDQGVVGKA FSSGKLCYCK  360
NITEFSIIEY PLVHYARWCG LTTSFAICLK SGDDAYILEL FLPPDNGDPI MLLGSILTTM  420
GQHFRNFKFA SGQELGNDSS VQVVKASSDK NVDYFHICQA RASPFMPEVL HVEDRRNQLM  480
EGNENHTEKE DRQQSMVQSN VLSIDSHVIS EKQCVSVTHL QKESRTRTKD SVNYDDLKQH  540
FDKNLSDAAE SLQISRSTLK RLCRKYGIRR WPLSKRKKSS ESDHQTLTML SKKNKSVASE  600
TTTQKDHESC SSSFTVKATF GDDMMKFKLY TFSRKDDLDN EVAKRLKLPI GRFRINYMDE  660
DNDWIWIACD DDLSDCFNNA QSLGNNTIKM LVLPAAINHH LEL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400021688
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006343816.20.0PREDICTED: protein NLP7-like isoform X1
TrEMBLM1AWJ60.0M1AWJ6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000319410.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13879911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24020.16e-84NIN like protein 7
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]