PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400021675
Common NameLOC102578853
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Dof
Protein Properties Length: 333aa    MW: 36485.1 Da    PI: 8.357
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400021675genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.11.1e-3940101263
                zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 
                           k++ ++cprC+stntkfCyynnyslsqPryfCk+CrryWt+GG+lrn+PvGgg+rknkksss
  PGSC0003DMP400021675  40 KDQVVNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKKSSS 101
                           78999*****************************************************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-253389IPR003851Zinc finger, Dof-type
PfamPF027017.8E-344198IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.9294498IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104682IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MDTAQWPQEI LVKPMEDIIG NTNGSSKPNC VERKLVRPQK DQVVNCPRCN STNTKFCYYN  60
NYSLSQPRYF CKTCRRYWTE GGSLRNIPVG GGSRKNKKSS SPYNSNNNHV IVNNKKLPDN  120
LVAPPPQRDN IEEYPERHFG NRPDTSIPQH HHAQNPSKIV HEGSQDLNLG FSSDFKTITE  180
LIQVPNYDGS NKDNNSPNIS TLPPPPPSSS SSASSPSQLS AMELINGITS RGLNSNSFMT  240
MPNSVYNSSG FSLMPSLNFS LDHGLGNNVH HSSYGNNNNL QETNANGRFL FPFVGLKQVS  300
NNTSDGANEP SLGDQSTNGY WNGMLGGGGG SW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400021675
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754471e-168HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006344006.10.0PREDICTED: dof zinc finger protein DOF4.6-like
TrEMBLM1AWI30.0M1AWI3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000319280.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8824419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24060.17e-44Dof family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]