PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400021675 | ||||||||
Common Name | LOC102578853 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | Dof | ||||||||
Protein Properties | Length: 333aa MW: 36485.1 Da PI: 8.357 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 126.1 | 1.1e-39 | 40 | 101 | 2 | 63 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 k++ ++cprC+stntkfCyynnyslsqPryfCk+CrryWt+GG+lrn+PvGgg+rknkksss PGSC0003DMP400021675 40 KDQVVNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKKSSS 101 78999*****************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-25 | 33 | 89 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 7.8E-34 | 41 | 98 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.929 | 44 | 98 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 46 | 82 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MDTAQWPQEI LVKPMEDIIG NTNGSSKPNC VERKLVRPQK DQVVNCPRCN STNTKFCYYN 60 NYSLSQPRYF CKTCRRYWTE GGSLRNIPVG GGSRKNKKSS SPYNSNNNHV IVNNKKLPDN 120 LVAPPPQRDN IEEYPERHFG NRPDTSIPQH HHAQNPSKIV HEGSQDLNLG FSSDFKTITE 180 LIQVPNYDGS NKDNNSPNIS TLPPPPPSSS SSASSPSQLS AMELINGITS RGLNSNSFMT 240 MPNSVYNSSG FSLMPSLNFS LDHGLGNNVH HSSYGNNNNL QETNANGRFL FPFVGLKQVS 300 NNTSDGANEP SLGDQSTNGY WNGMLGGGGG SW* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400021675 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 1e-168 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006344006.1 | 0.0 | PREDICTED: dof zinc finger protein DOF4.6-like | ||||
TrEMBL | M1AWI3 | 0.0 | M1AWI3_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400031928 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA88 | 24 | 419 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24060.1 | 7e-44 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400021675 |
Entrez Gene | 102578853 |
Publications ? help Back to Top | |||
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